View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7663_low_2 (Length: 244)

Name: NF7663_low_2
Description: NF7663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7663_low_2
NF7663_low_2
[»] chr8 (1 HSPs)
chr8 (13-229)||(35880606-35880804)
[»] chr4 (1 HSPs)
chr4 (13-229)||(24454807-24455005)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 35880804 - 35880606
Alignment:
Q  13 aatatagcttataaatcagagtttcattacaaggtaaataaaattaacgtaaaaattgttttaatcaagatttaacatgagtgattatgaacgattcatc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35880804 aatatagcttataaatcagagtttcattacaaggtaaataaaattaacgtaaaaattgttttaatcaagattaaacatgagtgattatgaacgattcatc 35880705  T
Q  113 taaatttcgctagcctcttgacttgagtccaaccgctgaaataaacacaagaccatttatatacaagctcactcggaatgagataacatagccatgagaa 212  Q
    ||||||||||||||||||||||||||||||||||||| ||                  ||||||||||||||| ||||||||||||||||||||||||||    
T  35880704 taaatttcgctagcctcttgacttgagtccaaccgctcaa------------------atatacaagctcacttggaatgagataacatagccatgagaa 35880623  T

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Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 24455005 - 24454807
Alignment:
Q  13 aatatagcttataaatcagagtttcattacaaggtaaataaaattaacgtaaaaattgttttaatcaagatttaacatgagtgattatgaacgattcatc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24455005 aatatagcttataaatcagagtttcattacaaggtaaataaaattaacgtaaaaattgttttaatcaagattaaacatgagtgattatgaacgattcatc 24454906  T
Q  113 taaatttcgctagcctcttgacttgagtccaaccgctgaaataaacacaagaccatttatatacaagctcactcggaatgagataacatagccatgagaa 212  Q
    ||||||||||||||||||||||||||||||||||||| ||                  ||||||||||||||| ||||||||||||||||||||||||||    
T  24454905 taaatttcgctagcctcttgacttgagtccaaccgctcaa------------------atatacaagctcacttggaatgagataacatagccatgagaa 24454824  T

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