View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7664_low_1 (Length: 450)

Name: NF7664_low_1
Description: NF7664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7664_low_1
NF7664_low_1
[»] chr2 (21 HSPs)
chr2 (17-102)||(27766536-27766621)
chr2 (149-194)||(6999097-6999142)
chr2 (150-206)||(28544029-28544085)
chr2 (156-211)||(7438572-7438627)
chr2 (148-191)||(40874293-40874336)
chr2 (156-194)||(2563708-2563746)
chr2 (156-194)||(13765404-13765442)
chr2 (156-194)||(14233748-14233786)
chr2 (156-194)||(18737903-18737941)
chr2 (156-194)||(22526023-22526061)
chr2 (149-199)||(37631252-37631302)
chr2 (222-292)||(41317290-41317360)
chr2 (156-194)||(43057068-43057106)
chr2 (149-194)||(6170627-6170672)
chr2 (149-194)||(8427549-8427594)
chr2 (222-263)||(40210005-40210046)
chr2 (222-263)||(43520572-43520613)
chr2 (222-262)||(32900265-32900305)
chr2 (147-191)||(37257444-37257488)
chr2 (156-192)||(39449148-39449184)
chr2 (150-206)||(45376238-45376294)
[»] chr3 (33 HSPs)
chr3 (151-290)||(37143120-37143262)
chr3 (156-294)||(31930941-31931086)
chr3 (222-294)||(31350512-31350584)
chr3 (156-294)||(31664628-31664772)
chr3 (222-294)||(49875887-49875958)
chr3 (156-211)||(31425538-31425593)
chr3 (222-291)||(46114270-46114339)
chr3 (151-211)||(49875795-49875855)
chr3 (222-294)||(15927501-15927573)
chr3 (222-290)||(33976304-33976372)
chr3 (150-194)||(48352994-48353038)
chr3 (231-290)||(31425632-31425691)
chr3 (150-192)||(15927626-15927668)
chr3 (222-291)||(50886285-50886352)
chr3 (222-283)||(41610408-41610469)
chr3 (203-263)||(42546695-42546755)
chr3 (148-191)||(24482995-24483038)
chr3 (156-211)||(42357093-42357147)
chr3 (156-211)||(52939657-52939711)
chr3 (156-194)||(31350635-31350673)
chr3 (156-190)||(33976427-33976461)
chr3 (156-194)||(49021715-49021753)
chr3 (156-194)||(52963345-52963383)
chr3 (156-194)||(55400003-55400041)
chr3 (149-194)||(14207287-14207332)
chr3 (149-194)||(14215035-14215080)
chr3 (222-282)||(41448101-41448161)
chr3 (151-192)||(45054973-45055014)
chr3 (150-194)||(16129520-16129563)
chr3 (151-199)||(20216084-20216132)
chr3 (147-191)||(28419246-28419290)
chr3 (150-194)||(29573385-29573429)
chr3 (156-192)||(31376796-31376832)
[»] chr1 (30 HSPs)
chr1 (156-295)||(18982523-18982669)
chr1 (223-294)||(46859524-46859595)
chr1 (158-206)||(36775112-36775160)
chr1 (222-294)||(36775198-36775270)
chr1 (330-415)||(42331613-42331694)
chr1 (156-211)||(46859422-46859477)
chr1 (156-194)||(36775076-36775114)
chr1 (149-194)||(52714930-52714975)
chr1 (151-212)||(19947752-19947813)
chr1 (222-294)||(5466241-5466313)
chr1 (223-263)||(15067765-15067805)
chr1 (148-192)||(44789174-44789218)
chr1 (151-194)||(49020433-49020476)
chr1 (156-194)||(649772-649810)
chr1 (156-194)||(9566990-9567028)
chr1 (156-194)||(10890075-10890113)
chr1 (156-194)||(13489666-13489704)
chr1 (156-194)||(15705091-15705129)
chr1 (150-192)||(47820532-47820574)
chr1 (156-194)||(48983697-48983735)
chr1 (156-194)||(52362486-52362524)
chr1 (149-194)||(3159373-3159417)
chr1 (149-194)||(49931550-49931595)
chr1 (147-199)||(21255668-21255720)
chr1 (156-192)||(30658879-30658915)
chr1 (151-199)||(32966403-32966451)
chr1 (151-191)||(35136843-35136883)
chr1 (151-191)||(36577444-36577484)
chr1 (150-194)||(47642636-47642680)
chr1 (146-194)||(49569990-49570038)
[»] chr6 (22 HSPs)
chr6 (223-291)||(2204312-2204380)
chr6 (217-294)||(10729656-10729736)
chr6 (156-294)||(28982547-28982706)
chr6 (222-292)||(34383766-34383836)
chr6 (222-294)||(5456756-5456828)
chr6 (222-294)||(354365-354436)
chr6 (156-211)||(354280-354335)
chr6 (156-209)||(5456864-5456917)
chr6 (147-211)||(8098608-8098671)
chr6 (151-206)||(34383875-34383930)
chr6 (156-192)||(15368854-15368890)
chr6 (156-194)||(3552183-3552221)
chr6 (156-194)||(20822897-20822935)
chr6 (156-194)||(24900779-24900817)
chr6 (156-206)||(32046702-32046752)
chr6 (156-194)||(32459546-32459584)
chr6 (222-276)||(3339422-3339478)
chr6 (158-194)||(5739793-5739829)
chr6 (156-192)||(15318219-15318255)
chr6 (156-192)||(17551410-17551446)
chr6 (156-192)||(33421764-33421800)
chr6 (146-194)||(33712314-33712362)
[»] chr7 (17 HSPs)
chr7 (222-294)||(2819346-2819418)
chr7 (222-294)||(12651228-12651300)
chr7 (156-206)||(2819257-2819307)
chr7 (223-291)||(19223540-19223608)
chr7 (150-206)||(48814825-48814881)
chr7 (156-194)||(12007215-12007253)
chr7 (156-194)||(37899327-37899365)
chr7 (156-194)||(41893919-41893957)
chr7 (156-194)||(43159604-43159642)
chr7 (156-194)||(47448830-47448868)
chr7 (156-189)||(35293132-35293165)
chr7 (149-194)||(40854684-40854729)
chr7 (152-189)||(46148312-46148349)
chr7 (222-294)||(11778671-11778743)
chr7 (150-194)||(26041451-26041495)
chr7 (156-192)||(33057383-33057419)
chr7 (155-199)||(40077391-40077435)
[»] chr4 (20 HSPs)
chr4 (231-295)||(3698415-3698479)
chr4 (328-436)||(41805809-41805913)
chr4 (222-263)||(7146069-7146110)
chr4 (150-211)||(37997254-37997314)
chr4 (215-291)||(25467880-25467956)
chr4 (156-191)||(2004221-2004256)
chr4 (360-436)||(39599346-39599417)
chr4 (222-276)||(51734556-51734611)
chr4 (156-194)||(2268537-2268574)
chr4 (156-194)||(2401614-2401652)
chr4 (153-211)||(19165439-19165497)
chr4 (156-194)||(37514161-37514199)
chr4 (156-194)||(51255750-51255788)
chr4 (222-291)||(33085252-33085321)
chr4 (156-193)||(42916654-42916691)
chr4 (150-191)||(51887661-51887702)
chr4 (266-294)||(4272474-4272502)
chr4 (146-194)||(32012890-32012938)
chr4 (222-262)||(32871768-32871808)
chr4 (156-211)||(54128056-54128112)
[»] chr8 (35 HSPs)
chr8 (156-211)||(21514949-21515004)
chr8 (225-294)||(40649560-40649629)
chr8 (156-194)||(31266263-31266301)
chr8 (222-294)||(12171996-12172069)
chr8 (222-294)||(12416424-12416497)
chr8 (222-263)||(31266171-31266212)
chr8 (156-227)||(40649454-40649526)
chr8 (151-194)||(5601016-5601059)
chr8 (151-194)||(5639561-5639604)
chr8 (151-194)||(14707373-14707416)
chr8 (151-194)||(23754736-23754779)
chr8 (151-194)||(25987816-25987859)
chr8 (151-194)||(26026895-26026938)
chr8 (248-291)||(44952746-44952789)
chr8 (156-194)||(3946244-3946282)
chr8 (156-194)||(4658292-4658330)
chr8 (152-190)||(6849149-6849187)
chr8 (156-194)||(7598712-7598750)
chr8 (156-194)||(9549228-9549266)
chr8 (156-194)||(10839511-10839549)
chr8 (149-191)||(12707146-12707188)
chr8 (156-194)||(33100498-33100536)
chr8 (156-194)||(42620006-42620044)
chr8 (151-192)||(29991411-29991452)
chr8 (146-199)||(30927813-30927866)
chr8 (151-192)||(34718114-34718155)
chr8 (149-190)||(37392013-37392054)
chr8 (156-192)||(5772003-5772039)
chr8 (222-294)||(7612115-7612187)
chr8 (151-191)||(16872188-16872228)
chr8 (150-194)||(22719438-22719481)
chr8 (150-194)||(25830275-25830319)
chr8 (150-194)||(27325756-27325799)
chr8 (150-194)||(31249554-31249597)
chr8 (146-194)||(36426049-36426097)
[»] chr5 (25 HSPs)
chr5 (149-194)||(16594405-16594450)
chr5 (222-277)||(16594299-16594354)
chr5 (360-436)||(745819-745892)
chr5 (150-191)||(43441736-43441777)
chr5 (223-294)||(25603574-25603643)
chr5 (151-194)||(6517711-6517754)
chr5 (156-191)||(14062865-14062900)
chr5 (151-194)||(21155986-21156029)
chr5 (31-102)||(25186255-25186326)
chr5 (156-194)||(1293115-1293153)
chr5 (156-194)||(4088447-4088485)
chr5 (156-194)||(8920082-8920120)
chr5 (156-194)||(10649439-10649477)
chr5 (156-194)||(13089811-13089849)
chr5 (156-194)||(24468315-24468353)
chr5 (148-189)||(9599652-9599693)
chr5 (214-263)||(21062236-21062285)
chr5 (151-211)||(10008523-10008583)
chr5 (156-212)||(13332336-13332392)
chr5 (223-283)||(13739530-13739590)
chr5 (150-194)||(16690497-16690541)
chr5 (151-199)||(23991367-23991415)
chr5 (42-102)||(25228148-25228208)
chr5 (42-102)||(25292304-25292364)
chr5 (156-192)||(30640794-30640830)
[»] scaffold0481 (1 HSPs)
scaffold0481 (222-294)||(1107-1179)
[»] scaffold1956 (1 HSPs)
scaffold1956 (156-211)||(775-830)
[»] scaffold0067 (1 HSPs)
scaffold0067 (156-211)||(35527-35581)
[»] scaffold0432 (1 HSPs)
scaffold0432 (156-194)||(6549-6587)
[»] scaffold0295 (1 HSPs)
scaffold0295 (217-263)||(3596-3642)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 27766536 - 27766621
Alignment:
Q  17 atcaacatctcataacattagaacttctgaagcttcagactcagataaactaactttgatgtttcatataagtggaaaagttttat 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27766536 atcagcatctcataacattagaacttctgaagcttcagactcagataaactaactctgatgtttcatataagtggaaaagttttat 27766621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 6999142 - 6999097
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||    
T  6999142 tttgagaaatgatatttgaacatccattttatgacaacttttgtga 6999097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 28544029 - 28544085
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc 206  Q
    ||||| ||||||||||| ||  ||||||||| ||||||||||||| |||||||||||    
T  28544029 ttgagaaatgatatttgtactaccattttttcacaacttttgtgacaaccatctctc 28544085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 7438572 - 7438627
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    ||||||||||||||| |||||||| |||||||||| ||| |||  |||||||||||    
T  7438572 aatgatatttgaacaaccatttttaaacaacttttatgacaactctctctcatact 7438627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 40874336 - 40874293
Alignment:
Q  148 atttgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||    
T  40874336 atttgagaaatgatatttgtacaaccattttttaacaacttttg 40874293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 2563708 - 2563746
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  2563708 aatgatatttgaacatccattttatgacaacttttgtga 2563746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 13765404 - 13765442
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  13765404 aatgatatttgaacatccattttatgacaacttttgtga 13765442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 14233786 - 14233748
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  14233786 aatgatatttgaacatccattttgtgacaacttttgtga 14233748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 18737941 - 18737903
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  18737941 aatgatatttgtatatccattttttaacaacttttgtga 18737903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 22526061 - 22526023
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  22526061 aatgatatttgaacatccattttttgacaatttttgtga 22526023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 37631252 - 37631302
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtgagaacc 199  Q
    |||||||||||||||||||||| ||||||  ||||||||||| ||| ||||    
T  37631252 tttgagcaatgatatttgaacaaccatttgctaacaacttttatgacaacc 37631302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 41317290 - 41317360
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattgg 292  Q
    |||||||| ||||||  |||| |||||| || |||| |||||||||||| | ||||||||||| |||||||    
T  41317290 ttctctctctattgtcattgttcaataagaatagagaaaaaagattgtcccaaaaagttgttgaaaattgg 41317360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 43057068 - 43057106
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  43057068 aatgatatttgaacaaccactttttaacaacttttgtga 43057106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 6170627 - 6170672
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| |||||||||| |||||||||||| | |||||||||||||    
T  6170627 tttgagaaatgatatttcaacatccattttatgacaacttttgtga 6170672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 8427549 - 8427594
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| ||||||||||||||||| ||||||| |||| ||||||||    
T  8427549 tttgagaaatgatatttgaacatctattttttgacaatttttgtga 8427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 40210046 - 40210005
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaa 263  Q
    |||||||| ||||||| ||||||||||| |||||||||||||    
T  40210046 ttctctctctattgttattgtccaataagaagagaggaaaaa 40210005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 43520613 - 43520572
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaa 263  Q
    |||| ||| ||||||||||||||||||| |||||||||||||    
T  43520613 ttctttctttattgttgttgtccaataataagagaggaaaaa 43520572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 32900305 - 32900265
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaa 262  Q
    |||||||| ||||||| || |||||||||||||||||||||    
T  32900305 ttctctctctattgttcttatccaataaaaagagaggaaaa 32900265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 37257444 - 37257488
Alignment:
Q  147 tatttgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    |||||||| ||||||||||||||||||||||  | ||||||||||    
T  37257444 tatttgagaaatgatatttgaacatccatttagtgacaacttttg 37257488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 39449184 - 39449148
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||||||||||| | |||||||||||    
T  39449184 aatgatatttgaacatccattttgtgacaacttttgt 39449148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 45376294 - 45376238
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc 206  Q
    ||||| ||||||||||| ||| ||| ||||| ||||||||||||| |||| ||||||    
T  45376294 ttgagaaatgatatttgtacaaccactttttgacaacttttgtgacaaccctctctc 45376238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 290
Target Start/End: Original strand, 37143120 - 37143262
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc--atact-----tgcacttttattctctctatattgttgttgtc 243  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||  |||||     || |||||||||||||||||  |||| |||||    
T  37143120 tgagtaatgatatttgaacatccattttttaacaacttttgtgacaaccctctctctcatactctcattgtacttttattctctctat--tgttattgtc 37143217  T
Q  244 caataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 290  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||    
T  37143218 caataaaaagag--gaaaaaggttgtcactaaaagttgttggaaatt 37143262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 31931086 - 31930941
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc--atact-----tgcacttttattctctctatattgttgttgtccaata 248  Q
    ||||||||||||||||||||||||||||||||||||||| ||   ||||||  |||||     || ||||||||| ||||| ||||||| || ||||||     
T  31931086 aatgatatttgaacatccattttttaacaacttttgtgacaattttctctctcatactcttattgtacttttattatctctctattgttattctccaatg 31930987  T
Q  249 aaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||||||||||| || ||||||||| ||||||||||||||||    
T  31930986 aaaagagaggaaaaaggttatcactaaaatttgttggaaattggtt 31930941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 31350584 - 31350512
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  31350584 ttctctctatattgttattgtccaataaaaagagagaaaaaaagttgtcactaaaagttgttggaaattggtt 31350512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 294
Target Start/End: Original strand, 31664628 - 31664772
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc--atact-----tgcacttttattctctctatattgttgttgtccaata 248  Q
    |||||||||||||||||||||||||||||||||| |||| ||   ||||||  |||||     || ||||||||||||||| | || || || ||||||     
T  31664628 aatgatatttgaacatccattttttaacaacttt-gtgacaattttctctctcatactcttattgtacttttattctctctctttttttattctccaatg 31664726  T
Q  249 aaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||||||||||| || ||||||||||||||||||||||||||    
T  31664727 aaaagagaggaaaaaggttatcactaaaagttgttggaaattggtt 31664772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 49875887 - 49875958
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  49875887 ttctctctctattgttattgtccaatgaaaagagaggaaaaa-attgtcactaaaagttgttggaaattggtt 49875958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 31425538 - 31425593
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  31425538 aatgatatttgaacatccattttttaacaacttttgtgacaatcatctctcatact 31425593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 46114339 - 46114270
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 291  Q
    |||||||| ||||||| |||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  46114339 ttctctctctattgttattgttcaatagaaagagaggaaaaaggttgtcaccaaaagttgttggaaattg 46114270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 49875795 - 49875855
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    |||| |||||||||| |||||||||||||||||||||||||||| |||  |||||||||||    
T  49875795 tgagaaatgatattttaacatccattttttaacaacttttgtgacaactctctctcatact 49875855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 15927573 - 15927501
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||  ||||||| ||||||||||||||||| | |||||  |||||||||||| || |||||||||||||    
T  15927573 ttctctcactattgttattgtccaataaaaagagcgaaaaaaagttgtcactaaaaattattggaaattggtt 15927501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 33976372 - 33976304
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 290  Q
    |||||||| ||||||| || |||||||||||||||||||||   |||||||||||| |||||| |||||    
T  33976372 ttctctctctattgttattatccaataaaaagagaggaaaagtgttgtcactaaaaattgttgaaaatt 33976304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 48352994 - 48353038
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  48352994 ttgagaaatgatatttgtacatccattttttaacaacttttgtga 48353038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 31425632 - 31425691
Alignment:
Q  231 tattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 290  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||| || ||| |||||    
T  31425632 tattgttattgtccaataaaaagagaggaaaaaggttgtcattaaaaattattgaaaatt 31425691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 15927668 - 15927626
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  15927668 ttgagtaataatatttgaacatccattttttaacaacttttgt 15927626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 50886285 - 50886352
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 291  Q
    |||||||| ||||||| |||||||||||||  ||||||||||  |||||||| |||||||||| ||||||    
T  50886285 ttctctctctattgttattgtccaataaaa--agaggaaaaacgttgtcactgaaagttgttgaaaattg 50886352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 41610408 - 41610469
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgtt 283  Q
    |||||||| ||||||| ||||| ||||||||||||| |||||  ||||||||| ||||||||    
T  41610408 ttctctctctattgttattgtctaataaaaagagagaaaaaatgttgtcactagaagttgtt 41610469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 42546755 - 42546695
Alignment:
Q  203 tctcatacttgcacttttattctctctatattgttgttgtccaataaaaagagaggaaaaa 263  Q
    ||||||||||| | ||||||||||||| ||| ||| || |||||||||||||||| |||||    
T  42546755 tctcatacttgtagttttattctctctctatcgtttttatccaataaaaagagagaaaaaa 42546695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 24483038 - 24482995
Alignment:
Q  148 atttgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||    
T  24483038 atttgagaaatgatatttgaacatccattttgtgacaacttttg 24482995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 42357147 - 42357093
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||  |||||||||||    
T  42357147 aatgatatttgaacaaccatttttt-acaacttttgtgacaactttctctcatact 42357093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 52939657 - 52939711
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||  |||||||||||    
T  52939657 aatgatatttgaacaaccatttttt-acaacttttgtgacaactttctctcatact 52939711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 31350673 - 31350635
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  31350673 aatgatattttaacatccattttttaacaatttttgtga 31350635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 33976461 - 33976427
Alignment:
Q  156 aatgatatttgaacatccattttttaacaactttt 190  Q
    ||||||||||||||||||||||| |||||||||||    
T  33976461 aatgatatttgaacatccattttgtaacaactttt 33976427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 49021715 - 49021753
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  49021715 aatgatatttgtacatccattttttaataacttttgtga 49021753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 52963383 - 52963345
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  52963383 aatgatatttgtacaaccattttttaacaacttttgtga 52963345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 55400003 - 55400041
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  55400003 aatgatatttgaacatccattttatgacaacttttgtga 55400041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 14207332 - 14207287
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||    
T  14207332 tttgagaaatgatatttgaacaacgattttgtaacaacttttgtga 14207287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 14215080 - 14215035
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||    
T  14215080 tttgagaaatgatatttgaacaacgattttgtaacaacttttgtga 14215035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 41448161 - 41448101
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaa-gattgtcactaaaagttgt 282  Q
    |||||||| ||||||| |||||| |||||||||||| ||||| ||||||||| |||||||||    
T  41448161 ttctctctctattgtttttgtccgataaaaagagagaaaaaatgattgtcac-aaaagttgt 41448101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 45054973 - 45055014
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgt 192  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  45054973 tgagaaatgatatttgaacatccattttctgacaacttttgt 45055014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 16129520 - 16129563
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||    
T  16129520 ttgaggaatgatatttgaacaaccatttttt-acaacttttgtga 16129563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 20216132 - 20216084
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtgagaacc 199  Q
    |||||||||||||||||||| ||||||  |||||| |||||||| ||||    
T  20216132 tgagcaatgatatttgaacaaccatttactaacaatttttgtgacaacc 20216084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 28419290 - 28419246
Alignment:
Q  147 tatttgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||||    
T  28419290 tattagagaaatgatatttgaacatctatttattaacaacttttg 28419246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 29573429 - 29573385
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||| ||| ||||||| |||||||||||||||    
T  29573429 ttgagaaatgatatttgtacaaccattttgtaacaacttttgtga 29573385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 31376832 - 31376796
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||||||||||| | |||||||||||    
T  31376832 aatgatatttgaacatccattttgtgacaacttttgt 31376796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 18982523 - 18982669
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaacc--atctctcatac-----ttgcacttttattctctctatattgttgttgtccaata 248  Q
    ||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||     ||| | ||||||||||||| |||||||||| |||||||    
T  18982523 aatgatatttgaacatccattttttaacaacttttgtgacaaccctctctctcatactcttattgtatttttattctctctctattgttgttatccaata 18982622  T
Q  249 aaaagagaggaaaaagattgtcactaaaagttgttggaaattggtta 295  Q
    |||| |||  |||||  |||||||  |||||||||||||||||||||    
T  18982623 aaaaaagataaaaaatgttgtcacccaaagttgttggaaattggtta 18982669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 46859524 - 46859595
Alignment:
Q  223 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46859524 tctctctctattgttattgtctaataaaaagagaggaaaaagactgtcactaaaagttgttggaaattggtt 46859595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 36775112 - 36775160
Alignment:
Q  158 tgatatttgaacatccattttttaacaacttttgtgagaaccatctctc 206  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  36775112 tgatatttgaacatccattttttaacaacttttgtgacaaccctctctc 36775160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 36775198 - 36775270
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||| | ||||||| |||||||||||||| |||| |||||| |||||||  ||||||||||||||||||||    
T  36775198 ttctctttctattgttattgtccaataaaaaaagagaaaaaaggttgtcacccaaagttgttggaaattggtt 36775270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 415
Target Start/End: Original strand, 42331613 - 42331694
Alignment:
Q  330 aataacgtcagtttaacactgataagttaaaagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaa 415  Q
    ||||||| ||||||||||||| ||  ||||| |||||||| |||||||||||||||||| ||||   |||||||||||||||||||    
T  42331613 aataacgccagtttaacactgttacattaaa-gggaggttagtgttatttgtgaaaatagaggg---ggtgtaagtgacatattaa 42331694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 46859422 - 46859477
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    |||||||||||| |||||||||||||||||||||||||| |||  |||||||||||    
T  46859422 aatgatatttgagcatccattttttaacaacttttgtgacaactctctctcatact 46859477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 36775076 - 36775114
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36775076 aatgatatttgaacatccattttttaacaacttttgtga 36775114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 52714975 - 52714930
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||    
T  52714975 tttgagaaatgatatttgaacatccattttataacaacttttgtga 52714930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 19947813 - 19947752
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatactt 212  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||| |||  |||||| |||||    
T  19947813 tgagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctcttactt 19947752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 5466313 - 5466241
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||| ||| ||||||| ||||||||||| ||| |||||||||| |||||||  |||||||||  |||||||||    
T  5466313 ttctttctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggtt 5466241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 15067805 - 15067765
Alignment:
Q  223 tctctctatattgttgttgtccaataaaaagagaggaaaaa 263  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  15067805 tctctctctattgttgttgtccaataagaagagaggaaaaa 15067765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 44789218 - 44789174
Alignment:
Q  148 atttgagcaatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||| ||||||||||||||||||||||| | |||||||||||    
T  44789218 atttgagaaatgatatttgaacatccattttgtgacaacttttgt 44789174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 49020476 - 49020433
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||    
T  49020476 tgagaaatgatatttgtacaaccattttttaacaacttttgtga 49020433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 649772 - 649810
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  649772 aatgatatttgaacaaccatttttttacaacttttgtga 649810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 9567028 - 9566990
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  9567028 aatgatatttgaacaaccattttttgacaacttttgtga 9566990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 10890113 - 10890075
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  10890113 aatgatatttgaacatccattttatgacaacttttgtga 10890075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 13489666 - 13489704
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  13489666 aatgatatttgaacatccattttatgacaacttttgtga 13489704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 15705129 - 15705091
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  15705129 aatgatatttgaacatccattttatgacaacttttgtga 15705091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 47820574 - 47820532
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||| ||||||||||||||||||||||| | |||||||||||    
T  47820574 ttgagaaatgatatttgaacatccattttatgacaacttttgt 47820532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 48983735 - 48983697
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  48983735 aatgatatttgaacaaccattttttgacaacttttgtga 48983697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 52362486 - 52362524
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  52362486 aatgatatttgaacatccattttatgacaacttttgtga 52362524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 3159373 - 3159417
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||    
T  3159373 tttgagaaatgatatttgaacaaccatttttt-acaacttttgtga 3159417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 49931550 - 49931595
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| ||||||||||| |||  ||||||||||||||||||||||    
T  49931550 tttgagaaatgatatttgtacaatcattttttaacaacttttgtga 49931595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 21255668 - 21255720
Alignment:
Q  147 tatttgagcaatgatatttgaacatccattttttaacaacttttgtgagaacc 199  Q
    |||| ||||||||||||||||||| ||||||  ||||||||||| ||| ||||    
T  21255668 tattagagcaatgatatttgaacaaccatttgctaacaacttttatgacaacc 21255720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 30658915 - 30658879
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||||||||||| | |||||||||||    
T  30658915 aatgatatttgaacatccattttgtgacaacttttgt 30658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 32966451 - 32966403
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtgagaacc 199  Q
    |||||||||||||||||||| | ||||  ||||||||||||||| ||||    
T  32966451 tgagcaatgatatttgaacaactatttactaacaacttttgtgacaacc 32966403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 35136843 - 35136883
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    |||| ||||||||||||||||||||||| | ||||||||||    
T  35136843 tgagaaatgatatttgaacatccattttgtgacaacttttg 35136883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 36577484 - 36577444
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    |||| ||||||||||||||||||||||| | ||||||||||    
T  36577484 tgagaaatgatatttgaacatccattttgtgacaacttttg 36577444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 47642680 - 47642636
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||||||| ||||||||| | |||||||||||    
T  47642680 ttgagaaatgatatttgaacaaccattttttgataacttttgtga 47642636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 49569990 - 49570038
Alignment:
Q  146 atatttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| |||| ||||||||||| ||||||||||  |||||||||||||||    
T  49569990 atatatgagaaatgatatttgtacatccatttcctaacaacttttgtga 49570038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 2204380 - 2204312
Alignment:
Q  223 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 291  Q
    ||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2204380 tctctctctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttggaaattg 2204312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 10729656 - 10729736
Alignment:
Q  217 ttttattctctctatattgttgtt---gtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||| |||||||| ||||||||||   ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10729656 tttttttctctctctattgttgttattgtccagtaaaaagagaggaaaaaggttgtcactaaaagttgttggaaattggtt 10729736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 28982706 - 28982547
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact-----tgcacttttattctctctat----------------att 234  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||     || ||||||||||||||| |                |||    
T  28982706 aatgatatttgaacatccattttttaacaacttttgtgacaactctctctcatactctcattgtacttttattctctctcttcctttttctctccctatt 28982607  T
Q  235 gttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
     || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  28982606 attattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttgaaaattggtt 28982547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 34383836 - 34383766
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattgg 292  Q
    |||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  34383836 ttctctctctattgttattgtccaataaaaagagaggaaaagggttgtcactaaaagttgttagaaattgg 34383766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 5456828 - 5456756
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| ||||||| ||||||||||||||||| | |||||  || ||||||||||||||||||||||||||    
T  5456828 ttctctctctattgttattgtccaataaaaagagcgaaaaaatgttatcactaaaagttgttggaaattggtt 5456756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 354365 - 354436
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| ||||||| ||||||||||||| ||||||||||| ||| ||  ||||||||||||||||||||||    
T  354365 ttctctctctattgttattgtccaataaaa-gagaggaaaaaaattatccttaaaagttgttggaaattggtt 354436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 354280 - 354335
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    |||||| |||||||||||||||||||||||||||||||| |||  |||||||||||    
T  354280 aatgatgtttgaacatccattttttaacaacttttgtgacaactctctctcatact 354335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 5456917 - 5456864
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcata 209  Q
    |||||||||||||||| |||||||||||||||||||||| |||  |||||||||    
T  5456917 aatgatatttgaacattcattttttaacaacttttgtgacaactctctctcata 5456864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 8098671 - 8098608
Alignment:
Q  147 tatttgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||| |||  |||||||||||    
T  8098671 tatttgagaaatgatatttgaacaaccatttttt-acaacttttgtgacaactttctctcatact 8098608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 34383930 - 34383875
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc 206  Q
    |||| |||||||||||||||| ||||||||||||| |||||||| |||| ||||||    
T  34383930 tgagaaatgatatttgaacattcattttttaacaatttttgtgacaaccctctctc 34383875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 15368890 - 15368854
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15368890 aatgatatttgaacatccattttgtaacaacttttgt 15368854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 3552221 - 3552183
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  3552221 aatgatatttgtacaaccattttttaacaacttttgtga 3552183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 20822935 - 20822897
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  20822935 aatgatatttgaacatccattttatgacaacttttgtga 20822897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 24900779 - 24900817
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  24900779 aatgatatttgaacaaccattttttgacaacttttgtga 24900817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 32046702 - 32046752
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc 206  Q
    ||||||||||||||||| ||||| ||||||||| ||||| |||| ||||||    
T  32046702 aatgatatttgaacatcaattttgtaacaacttatgtgacaaccttctctc 32046752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 32459584 - 32459546
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  32459584 aatgatatttgaacatccattttatgacaacttttgtga 32459546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 3339478 - 3339422
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaa--aagattgtcactaaa 276  Q
    |||||||| ||||||| ||| ||||||||||||||| |||  |||||||||||||||    
T  3339478 ttctctctctattgtttttgaccaataaaaagagagaaaaacaagattgtcactaaa 3339422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 5739829 - 5739793
Alignment:
Q  158 tgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||| | |||||||||||||||||||||    
T  5739829 tgatatttgaacaactattttttaacaacttttgtga 5739793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 15318255 - 15318219
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||||||||||| | |||||||||||    
T  15318255 aatgatatttgaacatccattttgtgacaacttttgt 15318219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 17551446 - 17551410
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  17551446 aatgatatttgaacaaccattttttgacaacttttgt 17551410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 33421764 - 33421800
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||||||||||| | |||||||||||    
T  33421764 aatgatatttgaacatccattttgtgacaacttttgt 33421800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 33712314 - 33712362
Alignment:
Q  146 atatttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| |||| ||||||||||||||| ||| ||||| |||||||||||||    
T  33712314 atatatgagaaatgatatttgaacaaccactttttgacaacttttgtga 33712362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 2819346 - 2819418
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  2819346 ttctgtctctattgttattgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggtt 2819418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 12651300 - 12651228
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| ||||||| |||||||||| ||| ||||||||||  ||||||| |||||||||||||||||||||    
T  12651300 ttctctctctattgttattgtccaatagaaaaagaggaaaaaagttgtcaccaaaagttgttggaaattggtt 12651228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 2819257 - 2819307
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc 206  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  2819257 aatgatatttgaacatccattttttaacaacttttatgacaaccatctctc 2819307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 19223540 - 19223608
Alignment:
Q  223 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 291  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| || ||| ||||||    
T  19223540 tctctctctattgttattgtccaataaaaagagaggaaaaaaattgtcattaaaaattattgaaaattg 19223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 48814881 - 48814825
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctc 206  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  48814881 ttgagtaatgatatttgaacattcattttttaacaacttttgtgacaaccctctctc 48814825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 12007253 - 12007215
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  12007253 aatgatatttgaacaaccattttttgacaacttttgtga 12007215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 37899327 - 37899365
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  37899327 aatgatatttgaacatccattttgtgacaacttttgtga 37899365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 41893919 - 41893957
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  41893919 aatgatatttgaacatccattttatgacaacttttgtga 41893957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 43159642 - 43159604
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  43159642 aatgatatttgaacaaccattttttaacaatttttgtga 43159604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 47448830 - 47448868
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  47448830 aatgatatttgaacaaccattttttgacaacttttgtga 47448868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 35293132 - 35293165
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttt 189  Q
    ||||||||||||||||||||||||| ||||||||    
T  35293132 aatgatatttgaacatccattttttgacaacttt 35293165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 40854729 - 40854684
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| |||||||| || ||||||||||| |||||||||||||||    
T  40854729 tttgagaaatgatatctgtacatccattttctaacaacttttgtga 40854684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 46148349 - 46148312
Alignment:
Q  152 gagcaatgatatttgaacatccattttttaacaacttt 189  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  46148349 gagcaatgatatttgaacaaccatttgttaacaacttt 46148312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 11778671 - 11778743
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| |||| || ||||||||||| |||  || ||||| |||||| ||||||||||||  |||||||||    
T  11778671 ttctctctctattattattgtccaataagaaggaagaaaaaaaattgtccctaaaagttgtttaaaattggtt 11778743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 26041495 - 26041451
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||| ||||||||||| | |||||||| ||||    
T  26041495 ttgagcaatgatatttgtacatccattttatgacaactttagtga 26041451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 33057383 - 33057419
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||| | |||||||||||||||||||    
T  33057383 aatgatatttgaacaactattttttaacaacttttgt 33057419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 40077435 - 40077391
Alignment:
Q  155 caatgatatttgaacatccattttttaacaacttttgtgagaacc 199  Q
    |||||||||||||||| |||||| |||||||||||| ||| ||||    
T  40077435 caatgatatttgaacaaccatttgttaacaacttttatgacaacc 40077391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 3698415 - 3698479
Alignment:
Q  231 tattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtta 295  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||| |||||||||||| ||||    
T  3698415 tattgttattgtccaataaaaagagaggaaaaaagttgtcactaaaaattgttggaaattagtta 3698479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 436
Target Start/End: Original strand, 41805809 - 41805913
Alignment:
Q  328 ctaataacgtcagtttaacactgataagttaaaagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagg 427  Q
    ||||||||| ||| ||||||||| ||  ||||| |||||||| |||||||| ||||||| | ||||||   ||||||||||||| ||||||| |||||||    
T  41805809 ctaataacgccagcttaacactgttacattaaa-gggaggttagtgttattggtgaaaacagaggggg---tgtaagtgacataataacatatttcaagg 41805904  T
Q  428 gaggtgagt 436  Q
    |||||||||    
T  41805905 gaggtgagt 41805913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 7146110 - 7146069
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaa 263  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  7146110 ttctctctctattgttattgtccaataaaaagagaggaaaaa 7146069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 37997254 - 37997314
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||| |||  |||||||||||    
T  37997254 ttgagaaatgatatttgaacaaccatttttt-acaacttttgtgacaactttctctcatact 37997314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 25467880 - 25467956
Alignment:
Q  215 acttttattctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 291  Q
    ||||||||||||||| ||||||| |  |||||||| || |||| ||||| ||| || ||||||||||||| ||||||    
T  25467880 acttttattctctctttattgttatcatccaataagaatagagaaaaaaaattatccctaaaagttgttgaaaattg 25467956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 191
Target Start/End: Complemental strand, 2004256 - 2004221
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttg 191  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2004256 aatgatatttgaacaaccattttttaacaacttttg 2004221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 436
Target Start/End: Complemental strand, 39599417 - 39599346
Alignment:
Q  360 aagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagggaggtgagt 436  Q
    |||||||||| | |||||||||||||||| ||||   |||| |||||||  |||||||||| |||||||||||||||    
T  39599417 aagggaggttagcgttatttgtgaaaataaaggg---ggtgcaagtgac--attaacatacctcaagggaggtgagt 39599346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 51734611 - 51734556
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagag-gaaaaagattgtcactaaa 276  Q
    |||||||| ||||||| ||||||||||| |||||||  ||||||||||||||||||    
T  51734611 ttctctctctattgttattgtccaataagaagagagaaaaaaagattgtcactaaa 51734556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 2268574 - 2268537
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2268574 aatgatatttgaacatccat-ttttaacaacttttgtga 2268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 2401614 - 2401652
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  2401614 aatgatatttgaacatccattttgtgacaacttttgtga 2401652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 19165497 - 19165439
Alignment:
Q  153 agcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    |||||||| ||||| ||| ||||||| |||||||||||||||||||  | |||||||||    
T  19165497 agcaatgacatttgtacaaccattttataacaacttttgtgagaactttatctcatact 19165439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 37514199 - 37514161
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  37514199 aatgatatttgtacatccattttgtaacaacttttgtga 37514161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 51255750 - 51255788
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  51255750 aatgatatttgaacaaccattttttgacaacttttgtga 51255788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 33085252 - 33085321
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 291  Q
    |||||||| ||||||| |  ||||||||||| | |||||||||||||||  |||||||| ||| ||||||    
T  33085252 ttctctctctattgttatcatccaataaaaataaaggaaaaagattgtccataaaagttattgaaaattg 33085321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 42916654 - 42916691
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtg 193  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  42916654 aatgatatttgaacaaccattttataacaacttttgtg 42916691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 51887661 - 51887702
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    ||||| ||||||||||||||||||||||| | ||||||||||    
T  51887661 ttgagaaatgatatttgaacatccattttgtgacaacttttg 51887702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 4272502 - 4272474
Alignment:
Q  266 ttgtcactaaaagttgttggaaattggtt 294  Q
    |||||||||||||||||||||||||||||    
T  4272502 ttgtcactaaaagttgttggaaattggtt 4272474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 32012890 - 32012938
Alignment:
Q  146 atatttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| |||| ||||||||||||||| ||| ||||| |||||||||||||    
T  32012890 atatatgagaaatgatatttgaacaaccaatttttgacaacttttgtga 32012938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 32871808 - 32871768
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaa 262  Q
    |||||||| ||||||| || |||||||||||||||||||||    
T  32871808 ttctctctctattgtttttatccaataaaaagagaggaaaa 32871768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 54128056 - 54128112
Alignment:
Q  156 aatgatatttgaa-catccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    ||||||||||||| || |||||||| |||||||||||||| |||  |||||||||||    
T  54128056 aatgatatttgaaacaaccatttttaaacaacttttgtgacaactctctctcatact 54128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 21515004 - 21514949
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  21515004 aatgatatttgaacatccattttttaacaatttttgtgacaaccctctctcatact 21514949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 40649560 - 40649629
Alignment:
Q  225 tctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    ||||| ||||| | |||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||    
T  40649560 tctctctattgctattgtccaataaaaatagaggaaaaaggttgtcactaaaaattgttgaaaattggtt 40649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 31266301 - 31266263
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31266301 aatgatatttgaacatccattttttaacaatttttgtga 31266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 12172069 - 12171996
Alignment:
Q  222 ttctctctatattgttgttgtccaa-taaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| ||||||| |||||||| ||| ||| |||||||||| |||||||||||| |||||  |||||||||    
T  12172069 ttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggtt 12171996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 12416497 - 12416424
Alignment:
Q  222 ttctctctatattgttgttgtccaa-taaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| ||||||| |||||||| ||| ||| |||||||||| |||||||||||| |||||  |||||||||    
T  12416497 ttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggtt 12416424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 31266212 - 31266171
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaa 263  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  31266212 ttctctctctattgttattgtccaataaaaagagaggaaaaa 31266171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 40649454 - 40649526
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcata-cttgcacttttattctct 227  Q
    |||||||||||||||| ||||||||||||| |||||||| |||  ||| |||||  ||| |||||||||||||    
T  40649454 aatgatatttgaacattcattttttaacaatttttgtgacaactctctatcatatattgtacttttattctct 40649526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 5601059 - 5601016
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||    
T  5601059 tgagaaatgatatttgaacaaccattttttgacaacttttgtga 5601016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 5639561 - 5639604
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||    
T  5639561 tgagaaatgatatttgaacaaccattttttgacaacttttgtga 5639604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 14707416 - 14707373
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| |||||||||||||||| |||||||| |||||||||||||    
T  14707416 tgagaaatgatatttgaacattcattttttgacaacttttgtga 14707373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 23754779 - 23754736
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||    
T  23754779 tgagaaatgatatttgaacaaccattttttaataacttttgtga 23754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 25987859 - 25987816
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||    
T  25987859 tgagaaatgatatttgaacaaccatttttttacaacttttgtga 25987816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 26026895 - 26026938
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||    
T  26026895 tgagaaatgatatttgaacaaccattttttgacaacttttgtga 26026938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 44952746 - 44952789
Alignment:
Q  248 aaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 291  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||    
T  44952746 aaaaagagagaaaaaagattgtcactaaaaattgttagaaattg 44952789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 3946244 - 3946282
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  3946244 aatgatatttgaacatccattttgtgacaacttttgtga 3946282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 4658330 - 4658292
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  4658330 aatgatatttgaacatccattttatgacaacttttgtga 4658292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 6849149 - 6849187
Alignment:
Q  152 gagcaatgatatttgaacatccattttttaacaactttt 190  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  6849149 gagcaatgatatttgaacagccattttctaacaactttt 6849187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 7598712 - 7598750
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  7598712 aatgatatttgaacaaccattttttgacaacttttgtga 7598750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 9549266 - 9549228
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  9549266 aatgatatttgaacatccattttgtgacaacttttgtga 9549228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 10839549 - 10839511
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  10839549 aatgatatttgaacaaccaatttttaacaacttttgtga 10839511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 12707146 - 12707188
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    |||||| ||||||||||||||||||||||| | ||||||||||    
T  12707146 tttgagaaatgatatttgaacatccattttatgacaacttttg 12707188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 33100536 - 33100498
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  33100536 aatgatatttgaacaaccattttataacaacttttgtga 33100498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 42620044 - 42620006
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  42620044 aatgatatttgtacatccattttctaacaacttttgtga 42620006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 29991411 - 29991452
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgt 192  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  29991411 tgagaaatgatatttgaacatccattttgtgacaacttttgt 29991452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 30927813 - 30927866
Alignment:
Q  146 atatttgagcaatgatatttgaacatccattttttaacaacttttgtgagaacc 199  Q
    ||||||||||||||||||||| ||||||||||  | |||||||| |||| ||||    
T  30927813 atatttgagcaatgatatttgtacatccatttcatgacaactttagtgacaacc 30927866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 34718114 - 34718155
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgt 192  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  34718114 tgagaaatgatatttgaacatccattttgtgacaacttttgt 34718155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 37392013 - 37392054
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaactttt 190  Q
    |||||||||||||||||||||| |||||| ||||||| ||||    
T  37392013 tttgagcaatgatatttgaacaaccatttgttaacaattttt 37392054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 5772039 - 5772003
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  5772039 aatgatatttgaacaaccattttttgacaacttttgt 5772003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 7612187 - 7612115
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| |||| || ||||| ||||| |||  || |||||||||||| ||||||||||||  |||||||||    
T  7612187 ttctctctctattattattgtctaataagaaggaagaaaaaagattgtccctaaaagttgtttaaaattggtt 7612115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 16872228 - 16872188
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    |||| ||||||||||||||||||||||| | ||||||||||    
T  16872228 tgagaaatgatatttgaacatccattttgtgacaacttttg 16872188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 22719438 - 22719481
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||    
T  22719438 ttgagaaatgatatttgaacaaccatttttt-acaacttttgtga 22719481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 25830319 - 25830275
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||| ||| ||||||| |||||||||||||||    
T  25830319 ttgagaaatgatatttgtacaaccattttctaacaacttttgtga 25830275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 27325756 - 27325799
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||    
T  27325756 ttgagaaatgatatttgaacaaccatttttt-acaacttttgtga 27325799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 31249597 - 31249554
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||    
T  31249597 ttgagaaatgatatttgaacaaccatttttt-acaacttttgtga 31249554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 36426097 - 36426049
Alignment:
Q  146 atatttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||| ||||||||||||||||||||||    |||||||||||||    
T  36426097 atatttgagaaatgatatttgaacatccatttaaagacaacttttgtga 36426049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 16594450 - 16594405
Alignment:
Q  149 tttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  16594450 tttgagaaatgatatttgaacatccattttttaacaacttttgtga 16594405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 16594354 - 16594299
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaa 277  Q
    |||||||| ||||||| ||||||||||||||||||||||| |  ||||||||||||    
T  16594354 ttctctctctattgttattgtccaataaaaagagaggaaataagttgtcactaaaa 16594299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 436
Target Start/End: Complemental strand, 745892 - 745819
Alignment:
Q  360 aagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagggaggtgagt 436  Q
    |||||||||| ||||||||||| |||||  ||||||   ||||||||| ||||||||||||||  ||||||||||||    
T  745892 aagggaggttagtgttatttgttaaaatcgaggggg---tgtaagtgatatattaacatactttgagggaggtgagt 745819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 43441736 - 43441777
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttg 191  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  43441736 ttgagaaatgatatttgaacatccattttgtaacaacttttg 43441777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 25603643 - 25603574
Alignment:
Q  223 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    ||||||| ||||||| |||||||||||||  ||||||||||  || ||||||||| ||||| ||||||||||    
T  25603643 tctctctctattgttattgtccaataaaa--agaggaaaaatgttatcactaaaaattgttagaaattggtt 25603574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 6517711 - 6517754
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| ||||||||||||||||||||||| | |||||||||||||    
T  6517711 tgagaaatgatatttgaacatccattttatgacaacttttgtga 6517754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 191
Target Start/End: Complemental strand, 14062900 - 14062865
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttg 191  Q
    ||||||||||||||||| ||||||||||||||||||    
T  14062900 aatgatatttgaacatctattttttaacaacttttg 14062865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 21155986 - 21156029
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||    
T  21155986 tgagaaatgatatttgaacaaccattttttgacaacttttgtga 21156029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 25186255 - 25186326
Alignment:
Q  31 acattagaacttctgaagcttcagactcagataaactaactttgatgtttcatataagtggaaaagttttat 102  Q
    |||| ||||| |||||||| |||||||||||| |||  |||  ||||||| ||||||||||||| |||||||    
T  25186255 acatcagaacctctgaagcatcagactcagattaaccgactcagatgttttatataagtggaaaggttttat 25186326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 1293153 - 1293115
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  1293153 aatgatatttgtacaaccattttttaacaacttttgtga 1293115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 4088447 - 4088485
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  4088447 aatgatatttgtacatccattttataacaacttttgtga 4088485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 8920082 - 8920120
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  8920082 aatgatatttgaacatccattttgtgacaacttttgtga 8920120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 10649439 - 10649477
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  10649439 aatgatatttgaacatccattttatgacaacttttgtga 10649477  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 13089849 - 13089811
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  13089849 aatgatatttgaacaaccattttttgacaacttttgtga 13089811  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 24468353 - 24468315
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  24468353 aatgatatttgaacaaccatttttaaacaacttttgtga 24468315  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 9599652 - 9599693
Alignment:
Q  148 atttgagcaatgatatttgaacatccattttttaacaacttt 189  Q
    ||||||||||||||||||| ||||||||||| | ||||||||    
T  9599652 atttgagcaatgatatttgtacatccattttatgacaacttt 9599693  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 21062285 - 21062236
Alignment:
Q  214 cacttttattctctctatattgttgttgtccaataaaaagagaggaaaaa 263  Q
    ||||||| |||||||| ||||||| ||||||||||| |||| ||||||||    
T  21062285 cacttttgttctctctttattgttattgtccaataagaagaaaggaaaaa 21062236  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 10008583 - 10008523
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    |||| ||||||||| |||||  ||||||| |||||||||||||| |||  |||||||||||    
T  10008583 tgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaactctctctcatact 10008523  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 13332336 - 13332392
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatactt 212  Q
    ||||||||||||||| |||||||| || ||||||||||| |||   |||||||||||    
T  13332336 aatgatatttgaacaaccatttttaaataacttttgtgataactccctctcatactt 13332392  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 13739530 - 13739590
Alignment:
Q  223 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgtt 283  Q
    ||||||| |||| || |||||||||||||||  || |||||| ||||| ||||||||||||    
T  13739530 tctctctctattattattgtccaataaaaaggaagaaaaaaggttgtccctaaaagttgtt 13739590  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 16690497 - 16690541
Alignment:
Q  150 ttgagcaatgatatttgaacatccattttttaacaacttttgtga 194  Q
    ||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  16690497 ttgagaaatgatatttgtacaaccatttcttaacaacttttgtga 16690541  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 23991415 - 23991367
Alignment:
Q  151 tgagcaatgatatttgaacatccattttttaacaacttttgtgagaacc 199  Q
    |||| ||||||||||||||| ||||||  ||||||||||| ||||||||    
T  23991415 tgaggaatgatatttgaacaaccatttgctaacaacttttttgagaacc 23991367  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 25228148 - 25228208
Alignment:
Q  42 tctgaagcttcagactcagataaactaactttgatgtttcatataagtggaaaagttttat 102  Q
    |||||||| |||||||||||| |||  |||  ||||||| ||||||||||||| |||||||    
T  25228148 tctgaagcatcagactcagattaaccgactcagatgttttatataagtggaaaggttttat 25228208  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 25292304 - 25292364
Alignment:
Q  42 tctgaagcttcagactcagataaactaactttgatgtttcatataagtggaaaagttttat 102  Q
    |||||||| |||||||||||| |||  |||  ||||||| ||||||||||||| |||||||    
T  25292304 tctgaagcatcagactcagattaaccgactcagatgttttatataagtggaaaggttttat 25292364  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 30640794 - 30640830
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgt 192  Q
    ||||||||||||||||||||||| | |||||||||||    
T  30640794 aatgatatttgaacatccattttgtgacaacttttgt 30640830  T

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Target: scaffold0481 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 1179 - 1107
Alignment:
Q  222 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 294  Q
    |||||||| ||||||| ||||||||||| ||| |||||||||| |||||||  |||||||||  |||||||||    
T  1179 ttctctctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggtt 1107  T

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Target: scaffold1956 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 775 - 830
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    ||||||||||||||||||||||||| | || |||||||| |||  |||||||||||    
T  775 aatgatatttgaacatccattttttgataatttttgtgacaactttctctcatact 830  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 35527 - 35581
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtgagaaccatctctcatact 211  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||  |||||||||||    
T  35527 aatgatatttgaacaaccatttttt-acaacttttgtgataactctctctcatact 35581  T

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Target: scaffold0432 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 6587 - 6549
Alignment:
Q  156 aatgatatttgaacatccattttttaacaacttttgtga 194  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  6587 aatgatatttgaacaatcattttttaacaacttttgtga 6549  T

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Target: scaffold0295 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 3642 - 3596
Alignment:
Q  217 ttttattctctctatattgttgttgtccaataaaaagagaggaaaaa 263  Q
    ||||||||||||| ||||||| || |||||||| |||||||||||||    
T  3642 ttttattctctctctattgtttttatccaataagaagagaggaaaaa 3596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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