View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7664_low_2 (Length: 395)
Name: NF7664_low_2
Description: NF7664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7664_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 28675111 - 28675488
Alignment:
| Q |
1 |
attagattgttcacaatggaacatacgtggaacttttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttca |
100 |
Q |
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| T |
28675111 |
attagattgttcacaatggaacatacgtggaacttttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttca |
28675210 |
T |
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| Q |
101 |
ctttttctgtcataaatttgagaattccctgctaaatcactagtgattgtggccatcttgttttgaggttattatctatataaagggaactttgtctcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28675211 |
ctttttctgtcataaatttgagaattccctgctaaatcactagtgattgtggccatcttgttttgaggttattatgtatataaagggaactttgtctcat |
28675310 |
T |
|
| Q |
201 |
ggattcaaaatgaagggattcaagacgagttgatggaagaaagagagaagtatcattgtttcctaagatgctctgcataaaaggacaaccaaattattgg |
300 |
Q |
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| T |
28675311 |
ggattcaaaatgaagggattcgagacgagttgatggaagaaagagggaggtatcattgtttcctaagatgctctgcataaaaggacaatcaaattattgt |
28675410 |
T |
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| Q |
301 |
cataacttgatttaataaagcaactagataagaagcatttccgatttgtccttgttaattacattaacctattaaaaa |
378 |
Q |
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| T |
28675411 |
cataacttgatttaataaagcaactagagaagaagcatttccgatttgtccttgttagttacattaacctattaaaaa |
28675488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 28670967 - 28671146
Alignment:
| Q |
1 |
attagattgttcacaatggaacatacgtggaacttttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttca |
100 |
Q |
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||||||||||||||||| |||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
28670967 |
attagattgttcacaatagaacatgcgtggaacttttgttactccattttctgtaagtccttggacaccaacctttgactcatcaaatttctttagttca |
28671066 |
T |
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| Q |
101 |
ctttttctgtcataaatttgagaattccctgctaaatc---actagtgattgtggccatcttgttttgaggttattatct |
177 |
Q |
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| T |
28671067 |
ctttttctgtcataaattggagaatttcctgctacatcattacttgtgattgtggccatcatgttttgtggtaattatct |
28671146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 28651248 - 28651362
Alignment:
| Q |
4 |
agattgttcacaatggaacatacgtggaacttttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttcactt |
103 |
Q |
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|||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
28651248 |
agattgttcacaatagaacatgcgtggaacttttgttactccattttctacaagtccttggacaccaacctttgactcatcaaactcctttagttcactt |
28651347 |
T |
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| Q |
104 |
tttctgtcataaatt |
118 |
Q |
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||| ||||||||||| |
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| T |
28651348 |
tttttgtcataaatt |
28651362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 28642386 - 28642501
Alignment:
| Q |
3 |
tagattgttcacaatggaacatacgtggaacttttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttcact |
102 |
Q |
| |
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||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
28642386 |
tagattgttcacaatagaacatgtgtggaacttttgttactccattttctacaagtccttggacaccaacctttgactcatcaaactcctttagttcact |
28642485 |
T |
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| Q |
103 |
ttttctgtcataaatt |
118 |
Q |
| |
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||| ||||||||||| |
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| T |
28642486 |
ctttttgtcataaatt |
28642501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 28691605 - 28691690
Alignment:
| Q |
30 |
gaacttttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttcactttttctgtcataa |
115 |
Q |
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| T |
28691605 |
gaacatttgtgacaccattttctacaagtccttgcacaccagcttttgaatcatcaaattctttcaattcacttttcctgtcataa |
28691690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 28651478 - 28651570
Alignment:
| Q |
250 |
gtatcattgtttcctaagatgctctgcataaaaggacaaccaaattattggcataacttga-tttaataaagcaactagataagaagcatttc |
341 |
Q |
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| T |
28651478 |
gtatcattgtttcctagaatactccgcataaaaggacaactatatttttgacctaatttgaatttaataaagcaactagataagaagcatttc |
28651570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 28696495 - 28696571
Alignment:
| Q |
35 |
tttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttcactttttctgtc |
111 |
Q |
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||||||||||||||||||||||||||||| |||||| | ||||| |||||||| | ||| | ||||||||| ||||| |
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| T |
28696495 |
tttgtgacaccattttctacaagtccttgcacaccagcttttgaatcatcaaattctttcaattcacttttcctgtc |
28696571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 339
Target Start/End: Original strand, 28642850 - 28642879
Alignment:
| Q |
310 |
atttaataaagcaactagataagaagcatt |
339 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28642850 |
atttaataaagcaactagataagaagcatt |
28642879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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