View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_12 (Length: 533)
Name: NF7665_high_12
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 43559051 - 43559397
Alignment:
| Q |
1 |
gaatttgtaagtatatgatgaaatgtatgggtttttgtctttttgatcatatttgagtctttgaccaaagagaaaaagggtgataaatataaaatatgta |
100 |
Q |
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| T |
43559051 |
gaatttgtaagtatatgatgcaatgtatgggtttttgtctttttgatcatatttgagtctttgaccaaagagaaaaagggtgataaatataaaatatgta |
43559150 |
T |
|
| Q |
101 |
atactaat-----aattcagtagttgtagtgttggacaatataaaatattacagccacaaaacaaaattagcttcaatcattaatcttaaagaatatacc |
195 |
Q |
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| T |
43559151 |
atactaatataataattcagtagttgtagtgttggacaatataaaatattacagccacaaaacaaaattagctacaatcattaatcttaaagaatatacc |
43559250 |
T |
|
| Q |
196 |
gttattcaaactttggcttatgaaaacagatacatcaatcaatggtaaggnnnnnnnnnnnnnnntccgggggagggggtatcaaatctcaatctcaatc |
295 |
Q |
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| T |
43559251 |
gttattcaaactttggcttatgaaaacagatacatcaatcaatggtaaggaaaaaaaaataaaaatccgggggagggggtatcaaatctcaatctcaatc |
43559350 |
T |
|
| Q |
296 |
ttaattttatgtactatcaacacctttctatattttctactttgaac |
342 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43559351 |
ttaatcatatgtactatcaacacctttctatattttctactttgaac |
43559397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 397 - 516
Target Start/End: Original strand, 43559449 - 43559568
Alignment:
| Q |
397 |
ttacaattcatatatgatggaagacatcaaaatttgcttctgttaaatcttctgaaagtgatgttaatggatagctattgaaatcttctattgaattgtg |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559449 |
ttacaattcatatatgatggaagacatcaaaatttgcttctgttaaatcttctgaaagtgatgttaatggatagctattgaaatcttctattgaattgtg |
43559548 |
T |
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| Q |
497 |
agtttgaagttgtccttctt |
516 |
Q |
| |
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| T |
43559549 |
agtttgaagttgtccttctt |
43559568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 397 - 514
Target Start/End: Original strand, 1992094 - 1992211
Alignment:
| Q |
397 |
ttacaattcatatatgatggaagacatcaaaatttgcttctgttaaatcttctgaaagtgatgttaatggatagctattgaaatcttctattgaattgtg |
496 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1992094 |
ttacaatttatatatgatggaagatatcaaaatttgcttctgttaaatcttctgaaagtgatgttaaaggatagctattgaaatcttctattgaattgtg |
1992193 |
T |
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| Q |
497 |
agtttgaagttgtccttc |
514 |
Q |
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| T |
1992194 |
agtttgaagttgtccttc |
1992211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 397 - 514
Target Start/End: Original strand, 44613531 - 44613648
Alignment:
| Q |
397 |
ttacaattcatatatgatggaagacatcaaaatttgcttctgttaaatcttctgaaagtgatgttaatggatagctattgaaatcttctattgaattgtg |
496 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
44613531 |
ttacaatttatatatgatggaagacatcaaaatttgcttctgttaaatcttctgaaagtgatgttaaaggatagctattgaaatcttctattgaattgtg |
44613630 |
T |
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| Q |
497 |
agtttgaagttgtccttc |
514 |
Q |
| |
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|||||||||||||||||| |
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| T |
44613631 |
agtttgaagttgtccttc |
44613648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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