View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7665_high_13 (Length: 523)
Name: NF7665_high_13
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 4632588 - 4632072
Alignment:
| Q |
1 |
attgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgatattcgaattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
4632588 |
attgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgaaattcaaattta |
4632489 |
T |
|
| Q |
101 |
ggacatcatacattataccatatatttttatctctatctttcatttacaaatttcatctaatcgtccccaaaaaataaattatctaatccattatggatt |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
4632488 |
ggatatcatacattataccatatatttttatctctatttttcatttaaaaatttcatctaatcgtccctaaaaaataaattatttaatccattatggatt |
4632389 |
T |
|
| Q |
201 |
taaaaactaatacaccaaaataaccacatgaattctttgtttaaatcaaactatatgtgaagtgtct-------atcgcatttgctaataacaaattttt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
4632388 |
taaaaactaatacaccaaaataaccacatttattctttgtttaaatcaaactatatgtgaagtgtctatcggctatcgcatttgctaataacaaatcttt |
4632289 |
T |
|
| Q |
294 |
gcgagaattgaccatcannnnnnnat----agaaagaattgttcatctttaatggagtctcttatttcaattacatttttgtcatccataaagttcgaac |
389 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
4632288 |
gcgagaattgactatcatttctttatagaaagaaagaattgttcatctttaatggagtctctcatttcaattacattattgtcatccattaagttcgaat |
4632189 |
T |
|
| Q |
390 |
ccaaaactttgcttaagaattctaatccaattccactcataccaaattatttaggtaaacaccatatgattgtcattttgatgttgaaagttcaaacatt |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4632188 |
ccaaaactttgcttaagaattctaatccaattccactcataccaaattatttaggtaaacaccatttgattgtcattttgatgttgaaagttcaaacatt |
4632089 |
T |
|
| Q |
490 |
attttctcatccaatat |
506 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
4632088 |
attttcccatccaatat |
4632072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4638850 - 4638688
Alignment:
| Q |
1 |
attgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgatattcgaattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
4638850 |
attgatgttgtttcttagtgatttccctatctgctaatacgttttagaaaataattccctatttgatggctacaatttaattatttgaaattcgaattta |
4638751 |
T |
|
| Q |
101 |
ggacatcatacattataccatatatttttatctctatctttcatttacaaatttcatctaatc |
163 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4638750 |
ggatatgatacattataccatatatttttatctctatctttcatttacaattttcatctaatc |
4638688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 266 - 435
Target Start/End: Complemental strand, 4638625 - 4638455
Alignment:
| Q |
266 |
ctatcgcatttgctaataacaaatttttgcgagaattgaccatcannnnnnn--atagaaagaattgttcatctttaatggagtctcttatttcaattac |
363 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4638625 |
ctatcgcattggctaataacaaatctttgtgagaatagaccatcatttttttttatagaaagaattgttcatctttaatggagtctctcattccaattac |
4638526 |
T |
|
| Q |
364 |
atttttgtcatccataaagttcgaacccaaaactttgcttaagaattctaatccaattccactcataccaaa |
435 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4638525 |
attttcgtcatccataaagttcgaatccaaaactttgcttaagaattctaatccaattccact-ataccaaa |
4638455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4669193 - 4669024
Alignment:
| Q |
1 |
attgatgttgtttcttagtgatttccctatcttctaatacgtttt-----acaaaataattctttattcgatggctacaattttattatttgatattcga |
95 |
Q |
| |
|
|||||||||||||| |||| ||| |||||| | |||||||||||| ||||||||||| |||||||||| |||||||||||||||| | |||||| |
|
|
| T |
4669193 |
attgatgttgtttcatagtaattcccctatttcctaatacgttttcatttacaaaataatttcctattcgatggatacaattttattatttaaaattcga |
4669094 |
T |
|
| Q |
96 |
atttaggacatcat--acattataccatatatttttatctctatctttcatttacaaatttcatctaatc |
163 |
Q |
| |
|
|||||||| ||||| | || || || |||||| ||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
4669093 |
atttaggatatcatgcatataatcccgtatattcttacctctatctttcatttacaattttgatctaatc |
4669024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 4669031 - 4668908
Alignment:
| Q |
182 |
atctaatccattatggatttaaaaactaatacaccaaaataaccacatg-aattctttgtttaaatcaaactatatgtgaagtgtctatcgcatttgcta |
280 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| || || || ||| | || ||||||| |||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
4669031 |
atctaatccataatggatttaaaaaataatacaccggaacaagcaaatgtatttttttgttttaatcaaaccatatgtgaagtatctatcgcatttgtta |
4668932 |
T |
|
| Q |
281 |
ataacaaatttttgcgagaattga |
304 |
Q |
| |
|
|| || ||| |||||||||||||| |
|
|
| T |
4668931 |
atgactaatctttgcgagaattga |
4668908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 377 - 505
Target Start/End: Complemental strand, 4668194 - 4668066
Alignment:
| Q |
377 |
ataaagttcgaacccaaaactttgcttaagaattctaatccaattccactcataccaaatta-tttaggtaaacacc----atatgattgtcattttgat |
471 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| || ||| |||||||||| || ||||||| |||||||| |
|
|
| T |
4668194 |
ataaagttagaacccaaaactttgcttaaaaattctaa----attccact-ataccaaaataatttgggtaaacaccgtgtatttgattgtaattttgat |
4668100 |
T |
|
| Q |
472 |
gttgaaagttcaaacattattttctcatccaata |
505 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| |
|
|
| T |
4668099 |
gttgaaagttggaacattattttcccgtccaata |
4668066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 362
Target Start/End: Complemental strand, 4668732 - 4668563
Alignment:
| Q |
195 |
tggatttaaaaactaatacaccaaaataaccacatgaattctttgtttaaatcaaactatatgtgaagtgtctatcgcatttgctaataacaaat-tttt |
293 |
Q |
| |
|
|||||||||||| |||||||| | || || || ||| ||| ||||||| |||||||| ||||||||||| |||||||||||| |||| || ||| |||| |
|
|
| T |
4668732 |
tggatttaaaaaataatacacaagaacaagcaaatgtattttttgttttaatcaaaccatatgtgaagtatctatcgcatttattaatgactaatctttt |
4668633 |
T |
|
| Q |
294 |
gcgagaattga-ccatcannnnnnnatagaaagaattgttcatctttaatggagtctcttatttcaatta |
362 |
Q |
| |
|
| ||||||||| || | |||||||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
4668632 |
gtgagaattgatcctatatatttttttagaaagaattgttcatctttaatcgagtttcttattccaatta |
4668563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University