View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7665_high_15 (Length: 494)

Name: NF7665_high_15
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7665_high_15
NF7665_high_15
[»] chr4 (8 HSPs)
chr4 (20-485)||(26473566-26474019)
chr4 (334-415)||(47680664-47680746)
chr4 (339-415)||(8445903-8445980)
chr4 (334-414)||(11307324-11307405)
chr4 (331-414)||(51681289-51681374)
chr4 (339-414)||(11307613-11307689)
chr4 (295-414)||(26080304-26080430)
chr4 (363-415)||(47680939-47680991)
[»] chr8 (3 HSPs)
chr8 (297-457)||(5981434-5981600)
chr8 (283-415)||(2954541-2954680)
chr8 (376-414)||(5981768-5981806)
[»] chr3 (6 HSPs)
chr3 (339-479)||(43481636-43481776)
chr3 (297-414)||(43978609-43978733)
chr3 (334-485)||(40196076-40196226)
chr3 (302-414)||(23162190-23162307)
chr3 (334-415)||(23161947-23162029)
chr3 (425-485)||(23162308-23162368)
[»] chr2 (2 HSPs)
chr2 (346-485)||(40053217-40053356)
chr2 (339-413)||(19548192-19548267)
[»] chr6 (1 HSPs)
chr6 (334-485)||(22612202-22612353)
[»] chr1 (7 HSPs)
chr1 (360-483)||(43834274-43834396)
chr1 (342-410)||(15327907-15327976)
chr1 (343-413)||(43834547-43834618)
chr1 (361-411)||(39030152-39030202)
chr1 (334-408)||(4392232-4392307)
chr1 (339-404)||(11199971-11200037)
chr1 (362-414)||(6182444-6182496)
[»] chr7 (3 HSPs)
chr7 (288-413)||(45100175-45100307)
chr7 (288-483)||(11776314-11776514)
chr7 (338-385)||(2463492-2463540)
[»] scaffold0039 (1 HSPs)
scaffold0039 (343-408)||(29075-29141)
[»] scaffold0548 (1 HSPs)
scaffold0548 (339-414)||(4102-4178)
[»] scaffold0160 (1 HSPs)
scaffold0160 (334-415)||(27481-27563)


Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 26474019 - 26473566
Alignment:
Q  20 tcactgccatgcaggacagtgtgtacagctttgttcacaatgaatgctgctttccattaacagattgggagaagatgccaactattcaaggcatgatagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26474019 tcactgccatgcaggacagtgtgtacagctttgttcacaatgaatgctgctttccattaacagattgggagaagatgccaactattcaaggcatgatagt 26473920  T
Q  120 gacaacattttacaagactttgcgatattttcaatcctttttaagtaattttctttttacaacaatatatacatctttggtatgtgtaattccttgaagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26473919 gacaacattttacaagactttgcgatattttcaatcctttttaagtaattttctttttacaacaatatatacatctttggtatgtgtaattccttgaagg 26473820  T
Q  220 acatttcagctcagaagataaaaaacttattaatcaagcgtgtcatttcaactgtttgattaaaattgtgttgggtttcaactgtgagtgattatcccac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||    
T  26473819 acatttcagctcagaagataaaaaacttattaatcaagcgtgtcatttcaac----------------tgttgggtttcaactgtgagtgattatcccac 26473736  T
Q  320 atcgattagga----agaaaacattggatatataagagagggactcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttat 415  Q
    |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26473735 atcgattaggaatggagaaaacattggatatataagagagggactcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttat 26473636  T
Q  416 agggtgtaggacgtttagcccattggcactcccggcgctccccgaactccccagcaattggtatcagagc 485  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26473635 agggtcctggacgtttagcccattggcactcccggcgctccccgaactccccagcaattggtatcagagc 26473566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 47680664 - 47680746
Alignment:
Q  334 aaacattggatatataagagagg-gactcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttat 415  Q
    |||||||| ||||||| |||||| ||| |||||||||||||  |||||||||| |||||||| ||||||||||||||||||||    
T  47680664 aaacattgaatatatatgagaggagacccatatacctgatgccttaaggttttgggtggagatgtggtgtctaagtctcttat 47680746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 8445903 - 8445980
Alignment:
Q  339 ttggatatataagagag-ggactcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttat 415  Q
    ||||||||||||||||| |||| ||||||| |||||  ||||||||||||||||||| |||| |||||||||||||||    
T  8445903 ttggatatataagagagaggacacatatacatgatgccttaaggttttaggtggagatgtggcgtctaagtctcttat 8445980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 11307405 - 11307324
Alignment:
Q  334 aaacattggatatataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctctta 414  Q
    |||| ||||||||||||||||||| || | |||||||||||  |||| ||||| |||||||| |||||||||||||||||||    
T  11307405 aaaccttggatatataagagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtctaagtctctta 11307324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 414
Target Start/End: Original strand, 51681289 - 51681374
Alignment:
Q  331 agaaaacattggatatataagagaggg--actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctctta 414  Q
    |||||||||||||||||||||| ||||  || ||||||||  ||   |||||||||| |||||||| |||||||||||||||||||    
T  51681289 agaaaacattggatatataagaaagggggacccatataccatataccttaaggttttgggtggagatgtggtgtctaagtctctta 51681374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 11307689 - 11307613
Alignment:
Q  339 ttggatatataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctctta 414  Q
    |||||||||| |||||||| || ||||||||| |||| |||| ||||| |||||||| ||||||||||||| |||||    
T  11307689 ttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 11307613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 414
Target Start/End: Original strand, 26080304 - 26080430
Alignment:
Q  295 tttcaactgtgagtgattat--cccacatcgattaggaa----gaaaacattggatatataagagagg-gactcatatacctgatgttttaaggttttag 387  Q
    |||||||| |||||||||||  ||||||| |||||| ||    ||||| | || |||||||||| ||| || || ||||||||||  |||||| ||||||    
T  26080304 tttcaactatgagtgattatgtcccacattgattagaaattgagaaaatactgaatatataagataggagattcttatacctgatcctttaagattttag 26080403  T
Q  388 gtggagaagtggtgtctaagtctctta 414  Q
    ||||| |||||  ||||||||||||||    
T  26080404 gtggaaaagtgacgtctaagtctctta 26080430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 47680939 - 47680991
Alignment:
Q  363 tatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttat 415  Q
    |||||||||||  |||||||||| |||||| | ||||| ||||||||||||||    
T  47680939 tatacctgatgccttaaggtttttggtggaaatgtggtttctaagtctcttat 47680991  T

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Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 297 - 457
Target Start/End: Complemental strand, 5981600 - 5981434
Alignment:
Q  297 tcaactgtgagtgattat--cccacatcgattaggaa----gaaaacattggatatataagagaggg-actcatatacctgatgttttaaggttttaggt 389  Q
    |||| |||||||||||||  |||||||||| ||||||    |||||| ||||||||||||||||||| || ||| |||||||||  |||||||||| |||    
T  5981600 tcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaacgttggatatataagagaggggacccatgtacctgatgccttaaggttttgggt 5981501  T
Q  390 ggagaagtggtgtctaagtctcttatagggtgtaggacgtttagcccattggcactcccggcgctccc 457  Q
    ||| | |||||||||||||||||||| || | | ||||||||||||||||| |||||| |||||||||    
T  5981500 ggaaatgtggtgtctaagtctcttattggttct-ggacgtttagcccattgtcactccaggcgctccc 5981434  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 415
Target Start/End: Complemental strand, 2954680 - 2954541
Alignment:
Q  283 aattgtgttgggtttcaactgtgagtgattat--cccacatcgattaggaa----gaaaacattggatatataagagagg-gactcatatacctgatgtt 375  Q
    |||| ||||||||||||| |||||||||||||  ||||||| || ||||||    |||||  |||||||||||||||||  ||| ||||| |||||||      
T  2954680 aattttgttgggtttcaagtgtgagtgattatgtcccacatagactaggaatggagaaaatgttggatatataagagagaagacccatatgcctgatgcc 2954581  T
Q  376 ttaaggttttaggtggagaagtggtgtctaagtctcttat 415  Q
    |||||||||| |||||||| |||| |||||||||||||||    
T  2954580 ttaaggttttcggtggagatgtggcgtctaagtctcttat 2954541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Complemental strand, 5981806 - 5981768
Alignment:
Q  376 ttaaggttttaggtggagaagtggtgtctaagtctctta 414  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  5981806 ttaaggttttgggtggagatgtggtgtctaagtctctta 5981768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 339 - 479
Target Start/End: Original strand, 43481636 - 43481776
Alignment:
Q  339 ttggatatataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttatagggtgtaggacgtttagccca 437  Q
    ||||||||||||||||||| || |||||||||||||  ||||| ||||||||||||| |||| |||||||||||||   || | | | ||||||| ||||    
T  43481636 ttggatatataagagaggggacccatatacctgatgcattaagattttaggtggagatgtggcgtctaagtctcttggtggttct-gtacgtttaaccca 43481734  T
Q  438 ttggcactcccggcgctccccgaactccccagcaattggtat 479  Q
    ||| ||||||||| ||||| || |||||||| ||||||||||    
T  43481735 ttgccactcccggagctcctcggactccccaacaattggtat 43481776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 43978733 - 43978609
Alignment:
Q  297 tcaactgtgagtgattat--cccacatcgattaggaa----gaaaacattggatatataagagagg-gactcatatacctgatgttttaaggttttaggt 389  Q
    |||| |||||||||||||  |||||||||| ||||||    | ||||||||||||||||||||||| |||||||||||||  ||  |||||||||| |||    
T  43978733 tcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacattggatatataagagaggagactcatatacctattgccttaaggttttgggt 43978634  T
Q  390 ggagaagtggtgtctaagtctctta 414  Q
    ||||| ||| | |||||||||||||    
T  43978633 ggagatgtgatatctaagtctctta 43978609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 485
Target Start/End: Complemental strand, 40196226 - 40196076
Alignment:
Q  334 aaacattggatatataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttatagggtgtaggacgttta 432  Q
    |||| |||||||| |||||||||| || ||||||||||| |  |||||||||| ||||||||  ||| |||||||||||||||  ||| |  || ||||     
T  40196226 aaactttggatatgtaagagaggggacccatatacctgacgccttaaggttttgggtggagatatggagtctaagtctcttat--ggtcttagatgtttg 40196129  T
Q  433 gcccattggcactcccggcgctccccgaactccccagcaattggtatcagagc 485  Q
    |||||||| | |||  || ||||||||  ||||||| ||| ||||||||||||    
T  40196128 gcccattgccgctcttggggctccccggtctccccaacaactggtatcagagc 40196076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 23162190 - 23162307
Alignment:
Q  302 tgtgagtgattat--cccacatcgattagga----agaaaacattggatatataagaga-gggactcatatacctgatgttttaaggttttaggtggaga 394  Q
    |||||||||||||  ||||||||||||||||    || |||| ||||| |||||||||| |||||||||| | ||||| | ||||| |||||||||||||    
T  23162190 tgtgagtgattatgtcccacatcgattaggaatggaggaaacgttggacatataagagaggggactcatacatctgat-tcttaagattttaggtggaga 23162288  T
Q  395 agtggtgtctaagtctctta 414  Q
     || ||||||||||||||||    
T  23162289 tgt-gtgtctaagtctctta 23162307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 23161947 - 23162029
Alignment:
Q  334 aaacattggatatataagagagg-gactcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttat 415  Q
    ||||||| ||||||||||||||| |||||||||||| ||||  ||||| |||| |||||||| ||||||| ||| | ||||||    
T  23161947 aaacattagatatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgtttaattttcttat 23162029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 485
Target Start/End: Complemental strand, 23162368 - 23162308
Alignment:
Q  425 gacgtttagcccattggcactcccggcgctccccgaactccccagcaattggtatcagagc 485  Q
    ||||||||| |||||| | ||||||| |||||||| |||||||| ||| ||||||||||||    
T  23162368 gacgtttagtccattgccgctcccggagctccccggactccccaacaactggtatcagagc 23162308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 346 - 485
Target Start/End: Original strand, 40053217 - 40053356
Alignment:
Q  346 tataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttatagggtgtaggacgtttagcccattggcac 444  Q
    |||||||||||| || ||||||| |||||| ||||||||||||||||||| |||| |||||||||||||    ||| | | ||||||||| ||||| | |    
T  40053217 tataagagaggggacccatatacatgatgtcttaaggttttaggtggagatgtggcgtctaagtctctt-ggtggtcttgaacgtttagctcattgccgc 40053315  T
Q  445 tcccggcgctccccgaactccccagcaattggtatcagagc 485  Q
    ||||| ||||||| | |||||||  ||||||||||||||||    
T  40053316 tcccgtcgctcccaggactcccctacaattggtatcagagc 40053356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 19548192 - 19548267
Alignment:
Q  339 ttggatatataagagagg-gactcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctctt 413  Q
    |||||||||||||||||| ||| |||||| || |||| |||||||||| |||||||| ||||||| ||||||||||    
T  19548192 ttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgtataagtctctt 19548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 485
Target Start/End: Complemental strand, 22612353 - 22612202
Alignment:
Q  334 aaacattggatatataagagaggga-ctcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttatagggtgtaggacgttta 432  Q
    |||| |||||||||||||||||||| ||| ||||| |||||  |||||||||| |||| ||| |||||||||||||||||||  || | | |||||||||    
T  22612353 aaacgttggatatataagagagggagctcgtatacttgatgccttaaggttttgggtgtagatgtggtgtctaagtctctta-gggttcttggacgttta 22612255  T
Q  433 gcccattggcactcccggcgctccccgaactccccagcaattggtatcagagc 485  Q
    ||||||||    |||||||||| |||  |||| ||| ||| |||||| |||||    
T  22612254 gcccattgttgatcccggcgcttcccatactcgccaacaactggtataagagc 22612202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 483
Target Start/End: Original strand, 43834274 - 43834396
Alignment:
Q  360 tcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctctta-tagggtgtaggacgtttagcccattggcactcccggcgctcccc 458  Q
    |||||||||| ||| |||||| |||| | |||||| |||| |||||||||||||| |||  | ||  |||||||||| |||| | |||||||||||||||    
T  43834274 tcatatacctaatgctttaagattttggatggagatgtggcgtctaagtctcttagtagttttta--acgtttagccaattgtcgctcccggcgctcccc 43834371  T
Q  459 gaactccccagcaattggtatcaga 483  Q
     ||||||||| ||| ||||||||||    
T  43834372 taactccccaacaactggtatcaga 43834396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 15327907 - 15327976
Alignment:
Q  342 gatatataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtct 410  Q
    |||||||||||||||| || |||||||||| ||| || ||||||| |||||||| |||||||||||||||    
T  15327907 gatatataagagaggggacccatatacctgttgtcttgaggttttgggtggagatgtggtgtctaagtct 15327976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 413
Target Start/End: Original strand, 43834547 - 43834618
Alignment:
Q  343 atatataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctctt 413  Q
    ||||||||||||||| || ||||||||| |||| |||||||||| | |||||| |||| |||||||||||||    
T  43834547 atatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgtggcgtctaagtctctt 43834618  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 39030152 - 39030202
Alignment:
Q  361 catatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctc 411  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||| ||||||    
T  39030152 catatacctaatgtcttaaggttttaggtggagatgtggtgtctgagtctc 39030202  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 4392307 - 4392232
Alignment:
Q  334 aaacattggatatataagagagg-gactcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagt 408  Q
    ||||||||||||||||| ||||| ||| |||||||||||||  ||||| |||| | |||||| ||||||| |||||    
T  4392307 aaacattggatatataacagaggagacccatatacctgatgccttaagattttggatggagatgtggtgtataagt 4392232  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 11199971 - 11200037
Alignment:
Q  339 ttggatatataagagagg-gactcatatacctgatgttttaaggttttaggtggagaagtggtgtct 404  Q
    |||||||||||||||||| ||||||||| ||| |||  |||||||||| |||||||| |||| ||||    
T  11199971 ttggatatataagagaggtgactcatatgcctaatgccttaaggttttgggtggagatgtggcgtct 11200037  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 6182444 - 6182496
Alignment:
Q  362 atatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctctta 414  Q
    ||||||||||||  ||||| |||| |||||||| ||||||| |||||||||||    
T  6182444 atatacctgatgccttaagattttgggtggagatgtggtgtataagtctctta 6182496  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 413
Target Start/End: Original strand, 45100175 - 45100307
Alignment:
Q  288 tgttgggtttcaactgtgagtgattatc--ccacatcgattaggaa----gaaaacattggatatataagagagg-gactcatatacctgatgttttaag 380  Q
    ||||||||||||| |||||||||||||   |||||| || ||||||    |||||  ||| |||||||||||||  |||||||||| || |||| ||||     
T  45100175 tgttgggtttcaagtgtgagtgattatgttccacattgactaggaattaagaaaatgttgaatatataagagagatgactcatataactaatgtcttaaa 45100274  T
Q  381 gttttaggtggagaagtggtgtctaagtctctt 413  Q
    ||||||| |||||| ||||||||||||||||||    
T  45100275 gttttagatggagatgtggtgtctaagtctctt 45100307  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 483
Target Start/End: Complemental strand, 11776514 - 11776314
Alignment:
Q  288 tgttgggtttcaactgtgagtgattat--cccacatcgattaggaa----gaaaacattggatatataagagaggg-actcatatacctgatgttttaag 380  Q
    ||||||| ||||| |||||||||||||  |||||||| | ||||||    | |||||||| ||||||||||||||| || ||||||| | ||   |||||    
T  11776514 tgttgggattcaagtgtgagtgattatgtcccacatcaactaggaatggaggaaacattgaatatataagagaggggacccatatacataataccttaag 11776415  T
Q  381 gttttaggtggagaagtggtgtctaagtctcttatagggtgtaggacgtttagcccattggcactcccggcgctccccgaactccccagcaattggtatc 480  Q
    ||||| |||||||| ||||  ||||||||||||||  ||| |||||  ||| || |||||  |||| |||||||||| | |||||||| ||| |||||||    
T  11776414 gttttgggtggagatgtggcatctaagtctcttat-tggtctagga-atttggctcattgttactctcggcgctccctggactccccaacaactggtatc 11776317  T
Q  481 aga 483  Q
    |||    
T  11776316 aga 11776314  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 385
Target Start/End: Original strand, 2463492 - 2463540
Alignment:
Q  338 attggatatataagaga-gggactcatatacctgatgttttaaggtttt 385  Q
    ||||||||||||||||| ||||| |||||||||||||  ||||||||||    
T  2463492 attggatatataagagaggggacacatatacctgatgccttaaggtttt 2463540  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 29075 - 29141
Alignment:
Q  343 atatataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagt 408  Q
    ||||||||||||||| ||||||||| ||||||| ||||| |||| |||||||| |||||||||||||    
T  29075 atatataagagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtctaagt 29141  T

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Target: scaffold0548 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 4178 - 4102
Alignment:
Q  339 ttggatatataagagaggg-actcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctctta 414  Q
    |||||||||| |||||||| || ||||||||| |||| |||| ||||| |||||||| ||||||||||||| |||||    
T  4178 ttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 4102  T

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Target: scaffold0160 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 27563 - 27481
Alignment:
Q  334 aaacattggatatataagagagg-gactcatatacctgatgttttaaggttttaggtggagaagtggtgtctaagtctcttat 415  Q
    |||||||| ||| |||||||||| ||| ||||||| |||||| ||||| ||||||||||||| |||   ||||||||||||||    
T  27563 aaacattgaatacataagagaggagacccatatacttgatgtcttaagattttaggtggagatgtgacatctaagtctcttat 27481  T

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