View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_23 (Length: 433)
Name: NF7665_high_23
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_23 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 417
Target Start/End: Complemental strand, 10493 - 10082
Alignment:
| Q |
5 |
tgtgccgaagctcttttgatagaataccaaaagggtgaagtactttgtgatgctttatacggtgtttggtatcggtgcgaaaaaggcttgaatggttcag |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10493 |
tgtgctgaagctcttttgatagaataccaaaagggtgaagtactttgtgatgctttatacggcgtttggtatcggtgcgaaaaaggcttgaatggttcag |
10394 |
T |
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| Q |
105 |
tttcaccctgcaaacaataatagttccatgttaatcatataccaaaaattcgacatggaaaatgctctacacaaannnnnnnnnnnnnnnctgcaaaaga |
204 |
Q |
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| T |
10393 |
tttcaccctgcaaacaataatagttccatgttaatcatttaccaaaaattcgacttggaaaatgctctacacaaatgtttaattttttt-ctgcaaaaga |
10295 |
T |
|
| Q |
205 |
atgaaaagtttctcaaatggttaaaaccaaattagatcgatttatattggaaacttacaatttctggagcaaaatcaagttcatggtttccaacagtcca |
304 |
Q |
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| T |
10294 |
atgaaaagtttctcgaatggttaaaaccaaattagatcgatttatattggaaacttacaatttctggagcaaaatcaagttcatggtttccaacagtcca |
10195 |
T |
|
| Q |
305 |
tatccacggttgataagcaacgctcctttctgcaaatcttccccaagtatcccacctaacattgtcatgattcgggtagttatctgcatacgagagatct |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10194 |
tatccacggttgataagcaacgctcctttctgcaaatcttccccaagtatcccacctaacattgtcatgattcgggtagttatctgcatatgagagatct |
10095 |
T |
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| Q |
405 |
ccaacaaacagaa |
417 |
Q |
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| T |
10094 |
ccaacaaacagaa |
10082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 13639173 - 13638763
Alignment:
| Q |
1 |
gatgtgtgccgaagctcttttgatagaataccaaaagggtgaagtactttgtgatgctttatacggtgtttggtatcggtgcgaaaaaggcttgaatggt |
100 |
Q |
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| T |
13639173 |
gatgtgagctgaagctctcttgatagaataccaaaagggcgaggtactttgcgatgctttgtaaggagtacggtatcggtgcgagtaaggcttgaatggt |
13639074 |
T |
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| Q |
101 |
tcagtttcaccctgcaaacaataatagttccatgttaatcat-ataccaaaaattcgacatggaaaatgctctacacaaannnnnnnnnnnnnnnctgca |
199 |
Q |
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| T |
13639073 |
tttgtttctccctgcaaacaaacataaatccatgttaatcatgatat--aaacttggactatgacaatgctctacacaaatgttaaaattttt--cagca |
13638978 |
T |
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| Q |
200 |
aaagaatgaaaagtttctcaaatggttaaaaccaaattagatcgatttatattggaaacttacaatttctggagcaaaatcaagttcatggtttccaaca |
299 |
Q |
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| T |
13638977 |
aaagagtgaaaagtttcttaaatgatcaaaaccaaattaagtcaatttctgttgaaagcttacaatttctggagcaaaatcaagttcatggtttccaaca |
13638878 |
T |
|
| Q |
300 |
gtccatatccacggttgataagcaacgctcctttctgcaaatcttccccaagtatcccacctaacattgtcatgattcgggtagttatctgcatacgaga |
399 |
Q |
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| T |
13638877 |
gtccatatccacggttgataagcaacgctcctttctgcaaatcttccccaagtatcccacctaacattgtcatgattcgggtagttatctgcatatgaga |
13638778 |
T |
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| Q |
400 |
gatctccaacaaaca |
414 |
Q |
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| T |
13638777 |
gatctccaacaaaca |
13638763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 262 - 414
Target Start/End: Original strand, 50981071 - 50981223
Alignment:
| Q |
262 |
caatttctggagcaaaatcaagttcatggtttccaacagtccatatccacggttgataagcaacgctcctttctgcaaatcttccccaagtatcccacct |
361 |
Q |
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| T |
50981071 |
caatttctggggcaaaatcaatttcatggtttcctacagtccatatccacggctgataagccgtgctcctttctacaaaccttccccaagtatcccacct |
50981170 |
T |
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| Q |
362 |
aacattgtcatgattcgggtagttatctgcatacgagagatctccaacaaaca |
414 |
Q |
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| T |
50981171 |
aacattgtcatgatttggaaagttatctgaataagagagatctccaacaaaca |
50981223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 50980961 - 50981061
Alignment:
| Q |
1 |
gatgtgtgccgaagctcttttgatagaataccaaaagggtgaagtactttgtgatgctttatacggtgtttggtatcggtgcgaaaaaggcttgaatggt |
100 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||| ||||||||| |
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| T |
50980961 |
gatgtgagctgaagctcttctgatagaataccaaaagggtgaagtactttgtgatgctttataaggagtgtggtatcggtgcgaataaggtttgaatggt |
50981060 |
T |
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| Q |
101 |
t |
101 |
Q |
| |
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| T |
50981061 |
t |
50981061 |
T |
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