View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_25 (Length: 387)
Name: NF7665_high_25
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 5231776 - 5231439
Alignment:
| Q |
16 |
ccaatcaaatgtagtctccacgggagtcatccttttatggaagctatgtccattaacctgcatgacattggtaaaattttataaatgttcacacttcgaa |
115 |
Q |
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| T |
5231776 |
ccaatcaaatgtagtctccacgggagtcatccttttatggaagctatgtccattaacctacatgacattggtaaaattttataaatgttcacacttcgaa |
5231677 |
T |
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| Q |
116 |
aaacatctaacgtggtaaatacaaacttatttaacatattctattatcttgtgttaccgttgccgtgttgaaaactacagttttgcaatcaggaagaatg |
215 |
Q |
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| T |
5231676 |
aaacatctaacgtggtaaatacaaacttatttaacatattctattatcttgtgttaccgttgccgtgttgaaaactacagttttgcaatcaggaagaatg |
5231577 |
T |
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| Q |
216 |
ctgacagaccaaggtggtagatcatattggccatttccaaatgtaaccgctgccgcagattttgtgtcatagtttgcaaggaatgcagcacagacactgg |
315 |
Q |
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| T |
5231576 |
ctgacagaccaaggtggtagatcatattggccatttccaaatgtaaccgttgccgcagattttgtgtcgtagtttgcaaggaatgcagcacaaatactgg |
5231477 |
T |
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| Q |
316 |
tatttacgtagtacacatgcgcctaagattacattaac |
353 |
Q |
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| T |
5231476 |
tatttacgtagtacacatgtgcctaagattacattaac |
5231439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 162 - 308
Target Start/End: Complemental strand, 17127183 - 17127037
Alignment:
| Q |
162 |
tcttgtgttaccgttgccgtgttgaaaactacagttttgcaatcaggaagaatgctgacagaccaaggtggtagatcatattggccatttccaaatgtaa |
261 |
Q |
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| T |
17127183 |
tcttgtgttacctttgcagtgttgaaaacctcagttttgcagtcaggaagaatactgatagaccaagggggtaggtcgtagtggccatttccaaatgcaa |
17127084 |
T |
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| Q |
262 |
ccgctgccgcagattttgtgtcatagtttgcaaggaatgcagcacag |
308 |
Q |
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| T |
17127083 |
cttttgcccacgatccagtgtcgtagtttgcaaggaatgcagcacag |
17127037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 312
Target Start/End: Original strand, 52548301 - 52548433
Alignment:
| Q |
180 |
gtgttgaaaactacagttttgcaatcaggaagaatgctgacagaccaaggtggtagatcatattggccatttccaaatgtaaccgctgccgcagattttg |
279 |
Q |
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| T |
52548301 |
gtgttgaaaattgcagttttgcagttaggaagaatgctaatagaccaaggaggtagttcatgttgtgcatctccatatttaaccgttgccgcatttctgg |
52548400 |
T |
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| Q |
280 |
tgtcatagtttgcaaggaatgcagcacagacac |
312 |
Q |
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| T |
52548401 |
tgtcataatttgcaaggaaggcagcacaaacac |
52548433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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