View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7665_high_26 (Length: 380)

Name: NF7665_high_26
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7665_high_26
NF7665_high_26
[»] chr8 (1 HSPs)
chr8 (1-211)||(3240090-3240301)
[»] chr3 (2 HSPs)
chr3 (78-119)||(29921857-29921898)
chr3 (78-119)||(29971010-29971051)
[»] chr2 (2 HSPs)
chr2 (69-119)||(12648158-12648208)
chr2 (82-120)||(18107983-18108021)
[»] chr1 (1 HSPs)
chr1 (78-116)||(32679342-32679380)
[»] chr5 (1 HSPs)
chr5 (78-119)||(8985180-8985221)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 3240301 - 3240090
Alignment:
Q  1 tcacttatttagattgaaaggaaatgaaaaaaga-atacggatgggtgattctagatcnnnnnnntgatctaaaactgcccctcctcaacgactgaaaga 99  Q
    |||||||||||||||||||||||||||||||| | || | |||||||||||||||||        ||| ||||||   ||||||||||||||| | ||||    
T  3240301 tcacttatttagattgaaaggaaatgaaaaaaaagatgcagatgggtgattctagataaaaaaaatgacctaaaatcacccctcctcaacgaccggaaga 3240202  T
Q  100 gaaagaaaacttagagagaaattgttggtaaagaattgtagagagctgtgatgaatgcttacgttcaaattttaaatgcaaatgcattttttcagttgtt 199  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3240201 gaaagaaaacttagagaaaaattcttggtaaagaattgtagagagctgtgttgattgcttacgttcaaattttaaatgcaaatgcattttttcagttgtt 3240102  T
Q  200 gtatgttagtga 211  Q
    ||||||||||||    
T  3240101 gtatgttagtga 3240090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 29921898 - 29921857
Alignment:
Q  78 cccctcctcaacgactgaaagagaaagaaaacttagagagaa 119  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  29921898 cccctcctcgacgaatgaaagagaaagaaaacttagagagaa 29921857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 29971051 - 29971010
Alignment:
Q  78 cccctcctcaacgactgaaagagaaagaaaacttagagagaa 119  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  29971051 cccctcctcgacgaatgaaagagaaagaaaacttagagagaa 29971010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 12648158 - 12648208
Alignment:
Q  69 ctaaaactgcccctcctcaacgactgaaagagaaagaaaacttagagagaa 119  Q
    |||||||  |||||||||||||| | |||||||||||||||||| ||||||    
T  12648158 ctaaaaccacccctcctcaacgagtaaaagagaaagaaaacttaaagagaa 12648208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 18107983 - 18108021
Alignment:
Q  82 tcctcaacgactgaaagagaaagaaaacttagagagaaa 120  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  18107983 tcctcaatgaatgaaagagaaagaaaacttagagagaaa 18108021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 32679342 - 32679380
Alignment:
Q  78 cccctcctcaacgactgaaagagaaagaaaacttagaga 116  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  32679342 cccctcctcgacgagtgaaagagaaagaaaacttagaga 32679380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 8985180 - 8985221
Alignment:
Q  78 cccctcctcaacgactgaaagagaaagaaaacttagagagaa 119  Q
    |||||||| ||||| |||||||||| ||||||||||||||||    
T  8985180 cccctcctaaacgagtgaaagagaacgaaaacttagagagaa 8985221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University