View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_4 (Length: 657)
Name: NF7665_high_4
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_4 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 3651258 - 3650880
Alignment:
| Q |
10 |
aataatatcttcttcatacaaataatttaatcattttcatatgatcaaaaccaatgcatctgccattgtttctctctaccaaaacctcaaactcgttgga |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3651258 |
aataatatcttcttcatacaaataatttaatcattttcatatgatcaaaaccaatgcatctgccattgtttctctctaccaaaacctcaaactcattgga |
3651159 |
T |
|
| Q |
110 |
gttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaatagatgaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3651158 |
gttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaatagatgaa |
3651059 |
T |
|
| Q |
210 |
gaatcagcatcttaatcaatgaattttgtggaggtgataacatcctatatagaaagatatgactacttacgtattcaacatcaagatcgaaaacatacgt |
309 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3651058 |
gaatcagcatcttaatcaatgaattttgtggaggtgataacatcatatatagaaagatatgactacttacgtattcaacatcaagatcgacaacatacgt |
3650959 |
T |
|
| Q |
310 |
gcggtatttgattcgaagatcattgacgatcttctccaactcggactcggatttgggtgcaaaggtgctggtacaaaca |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3650958 |
gcggtatttgattcgaagatcattgacgatcttctccaactcggactcggatttgggtgcaaaggtgctggtacaaaca |
3650880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 379 - 641
Target Start/End: Complemental strand, 3650361 - 3650099
Alignment:
| Q |
379 |
ggtacaaacacataaacaaatttcagtatcaggaatatagaatgcacataccagtcatgaagtagtatgaaagcaaaacctggatatcgttattggccat |
478 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3650361 |
ggtacaaaaacataaacaaatttcagtatcacgaatatagaatgcacataccagtcatgaagtagtatgaaagcaaaacctggatatcgttattggccat |
3650262 |
T |
|
| Q |
479 |
ggagaaatgtaactgatgtgagttgaaaggatgagaggtcaacagagtgaatggattatatatatacactcacataaatcatatgccataaaagcacctt |
578 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3650261 |
ggagaaatgtaactgatgtgagttgaaaggatgagaggtcaacagagtgaatggattatatatatacactcacataaatcatatgccatgaaagcacctt |
3650162 |
T |
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| Q |
579 |
gcattggtacaacacatatgcatgggaaagtataagccaattcaatgtgataagggaagttgg |
641 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3650161 |
gcattggtacaacacatatgcatgggaaagtataagccaatttaatgtgataagggaagttgg |
3650099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 72 - 347
Target Start/End: Original strand, 38466933 - 38467207
Alignment:
| Q |
72 |
ccattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgc |
171 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||| |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||| | | |
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| T |
38466933 |
ccattgtttctctcaaccaaaacctcaaattcgttgtagttacggtccaccaacatagcatatcgaccaagttcatccccaaagtcatgaccaaaaaggg |
38467032 |
T |
|
| Q |
172 |
ttggcaaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattttgtggaggtgataacatcctatatagaaagatatga |
271 |
Q |
| |
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||||||| ||||||||||| | ||| || |||| || |||||||| | || ||||| |||| ||||| |||||| | | |||||| | | | || | |
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| T |
38467033 |
ttggcaatacaaccatcccgtgaaaaccaaaagataaaaaatcagcaattaaaccaatgtatttcgtggatatgataa-aacgtatatacagacacatca |
38467131 |
T |
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| Q |
272 |
ctacttacgtattcaacatcaagatcgaaaacatacgtgcggtatttgattcgaagatcattgacgatcttctcca |
347 |
Q |
| |
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||||||||||||||||||||||||| | |||| || ||||||||||||| ||||||||||||||||||||||| |
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| T |
38467132 |
ttacttacgtattcaacatcaagatcaacggcataggttcggtatttgattctaagatcattgacgatcttctcca |
38467207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 559 - 637
Target Start/End: Original strand, 14586406 - 14586484
Alignment:
| Q |
559 |
atatgccataaaagcaccttgcattggtacaacacatatgcatgggaaagtataagccaattcaatgtgataagggaag |
637 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
14586406 |
atatgccataaaagcaccttgcattggtaaaacacagatgcatggaaaagtataagtcaatttaatgtgataagggaag |
14586484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 603
Target Start/End: Original strand, 38467397 - 38467499
Alignment:
| Q |
501 |
ttgaaaggatgagaggtcaacagagtgaatggattatatatatacactcacataaatcatatgccataaaagcaccttgcattggtacaacacatatgca |
600 |
Q |
| |
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|||||||||||||| | ||||||||||||||| ||||||||||| ||| | |||||||||| ||||||||||||| || |||||||||||||| |||| |
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| T |
38467397 |
ttgaaaggatgagaattgaacagagtgaatggaatatatatatactatcagaaaaatcatatgtcataaaagcacctagccttggtacaacacatttgca |
38467496 |
T |
|
| Q |
601 |
tgg |
603 |
Q |
| |
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||| |
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|
| T |
38467497 |
tgg |
38467499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 73 - 235
Target Start/End: Complemental strand, 10196752 - 10196590
Alignment:
| Q |
73 |
cattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgct |
172 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| || ||||| ||||||||| ||||||||| |||| || | ||||||||||||| ||||| || || |
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| T |
10196752 |
cattgttcctctcgaccaaaacctcgaactcattatagttagaatccaccaaccttgcgtagcgtccaatttggcccccaaagtcatgaccaaagattct |
10196653 |
T |
|
| Q |
173 |
tggcaaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattt |
235 |
Q |
| |
|
| || |||||||||| |||||| ||| |||| | |||||| || || ||||| ||||||||| |
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| T |
10196652 |
tagcgaaacaaccatgccctaatagtcaataaaagaagaaacaaaatgttaataaatgaattt |
10196590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 19462519 - 19462449
Alignment:
| Q |
131 |
gtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaa |
201 |
Q |
| |
|
|||||| |||| || ||| |||||||||||||||||||| |||||||||||||| || |||||| |||||| |
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| T |
19462519 |
gtagcgtccaatttggtctccaaagtcatggccaaacattcttggcaaaacaactatgccctaatagtaaa |
19462449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 537 - 641
Target Start/End: Original strand, 33053883 - 33053987
Alignment:
| Q |
537 |
tatatatacactcacataaatcatatgccataaaagcaccttgcattggtacaacacatatgcatgggaaagtataagccaattcaatgtgataagggaa |
636 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
33053883 |
tatatatacactcacagaaatcatatgccataaaagcaccttgcattggtacaacacatatgtatgggaaagtataagccaatttaatgtgataagggaa |
33053982 |
T |
|
| Q |
637 |
gttgg |
641 |
Q |
| |
|
||||| |
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|
| T |
33053983 |
gttgg |
33053987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 71 - 365
Target Start/End: Complemental strand, 35349772 - 35349487
Alignment:
| Q |
71 |
gccattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatg |
170 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||| |||||| ||||||||||| || || ||||||||||| |||||||||||||| |
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| T |
35349772 |
gccattgtttcgctcaaccaaaacctcaaattcgttgtagttacagtccaccaacatagcatatcgaccaagttcatccccaaagtcatg---------a |
35349682 |
T |
|
| Q |
171 |
cttggcaaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattttgtggaggtgataacatcctatatagaaagatatg |
270 |
Q |
| |
|
||||||| ||||||||||||| ||| || |||| || |||||||| | || ||||| |||| ||||| |||||| | | |||||| | | || |
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|
| T |
35349681 |
gttggcaatacaaccatcccctgaaaaccaaaagataaaaaatcagcaattaaaccaatgtatttcgtggatatgataa-aacgtatatacggacacatc |
35349583 |
T |
|
| Q |
271 |
actacttacgtattcaacatcaagatcgaaaacatacgtgcggtatttgattcgaagatcattgacgatcttctccaactcggac-tcggatttgg |
365 |
Q |
| |
|
| |||||||||||||||| | |||||| | ||||| || ||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||| |
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|
| T |
35349582 |
attacttacgtattcaacgtaaagatcaacgacataggttcggtatttgattctaagatcattgacgatcttctccagctcggtcgtcggatttgg |
35349487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 607
Target Start/End: Complemental strand, 35349283 - 35349242
Alignment:
| Q |
566 |
ataaaagcaccttgcattggtacaacacatatgcatgggaaa |
607 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||| |
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| T |
35349283 |
ataaaagcacctagccttggtacaacacatttgcatgggaaa |
35349242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 559 - 637
Target Start/End: Complemental strand, 230968 - 230890
Alignment:
| Q |
559 |
atatgccataaaagcaccttgcattggtacaacacatatgcatgggaaagtataagccaattcaatgtgataagggaag |
637 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| ||||| |||||||||||||||| |
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|
| T |
230968 |
atatgccataaaagcaccttgcattggtaaaacacagatgcatggaaaagtataagtcaatttaatgtgataagggaag |
230890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 31941764 - 31941891
Alignment:
| Q |
73 |
cattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgct |
172 |
Q |
| |
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||||||| ||||| ||||| ||||||||||| ||| ||||| ||||||| ||| ||||| |||| || ||| ||||||||||| |||||||| || |
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| T |
31941764 |
cattgttcctctcgaccaacacctcaaactcattgtagttagaatccaccagacttgcatagcgtccaatttggtctccaaagtcatgaccaaacattct |
31941863 |
T |
|
| Q |
173 |
tggcaaaacaaccatcccctaaaagtaaa |
201 |
Q |
| |
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| ||||||||| ||| |||||| |||||| |
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|
| T |
31941864 |
tcgcaaaacaa-cattccctaatagtaaa |
31941891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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