View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7665_high_40 (Length: 326)
Name: NF7665_high_40
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_40 |
 | |
|
| [»] scaffold0578 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0578 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 104 - 405
Alignment:
| Q |
6 |
tttggagttgcaaattagcggcattcatggaagaagcaacagttttggcctttattcacatgaaagaatgaatggaaagcatttcaaggtaagagaccac |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104 |
tttggagttgcaaattagaggcattcatggaagaagcaacagttttggcctttattcacatgaaagaatgaatggaaagcatttcaaggtaagagaccac |
203 |
T |
|
| Q |
106 |
tttcatttacattcacttcacgtggtgttacgttgcttcaatagttataaactttatatttgattgttcttatgcttagaagttagagcatcaccattac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
204 |
tttcatttacattcacttcacgtggtgttacgttgcttcaatagttataaactttatatttgattgttcttatgcttagaagttagagcatcaccattac |
303 |
T |
|
| Q |
206 |
ttaacttcttgtatagtgaactatacaaattagaattatggatcaaaaattggatgccaaagtgtgaactatagcatgatgtacattacaacaatcaaat |
305 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
304 |
ttaacttcttgtatagtaaactatacaaattagaattatggatcaaaaattggatagcaaagtgtgaactatagcatgatgtacattacaacaatcaaat |
403 |
T |
|
| Q |
306 |
ca |
307 |
Q |
| |
|
|| |
|
|
| T |
404 |
ca |
405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 4954117 - 4954418
Alignment:
| Q |
6 |
tttggagttgcaaattagcggcattcatggaagaagcaacagttttggcctttattcacatgaaagaatgaatggaaagcatttcaaggtaagagaccac |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4954117 |
tttggagttgcaaattagaggcattcatggaagaagcaacagttttggcctttattcacatgaaagaatgaatggaaagcatttcaaggtaagagaccac |
4954216 |
T |
|
| Q |
106 |
tttcatttacattcacttcacgtggtgttacgttgcttcaatagttataaactttatatttgattgttcttatgcttagaagttagagcatcaccattac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4954217 |
tttcatttacattcacttcacgtggtgttacgttgcttcaatagttataaactttatatttgattgttcttatgcttagaagttagagcatcaccattac |
4954316 |
T |
|
| Q |
206 |
ttaacttcttgtatagtgaactatacaaattagaattatggatcaaaaattggatgccaaagtgtgaactatagcatgatgtacattacaacaatcaaat |
305 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4954317 |
ttaacttcttgtatagtaaactatacaaattagaattatggatcaaaaattggatagcaaagtgtgaactatagcatgatgtacattacaacaatcaaat |
4954416 |
T |
|
| Q |
306 |
ca |
307 |
Q |
| |
|
|| |
|
|
| T |
4954417 |
ca |
4954418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University