View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7665_high_51 (Length: 265)

Name: NF7665_high_51
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7665_high_51
NF7665_high_51
[»] chr4 (34 HSPs)
chr4 (103-265)||(48457978-48458140)
chr4 (169-247)||(4505804-4505881)
chr4 (180-238)||(20004775-20004833)
chr4 (169-246)||(55109877-55109954)
chr4 (174-242)||(28704024-28704092)
chr4 (173-242)||(24670095-24670164)
chr4 (195-254)||(47683475-47683534)
chr4 (204-242)||(4608672-4608710)
chr4 (195-265)||(24916048-24916118)
chr4 (196-246)||(33997714-33997764)
chr4 (196-238)||(38490897-38490939)
chr4 (189-242)||(1237534-1237587)
chr4 (169-238)||(48458437-48458506)
chr4 (174-238)||(7712960-7713024)
chr4 (169-233)||(10214326-10214390)
chr4 (185-238)||(33389896-33389953)
chr4 (169-229)||(47044843-47044903)
chr4 (177-228)||(6028628-6028679)
chr4 (202-241)||(31444954-31444993)
chr4 (174-228)||(13860144-13860198)
chr4 (168-242)||(26067252-26067325)
chr4 (200-242)||(28588350-28588392)
chr4 (205-243)||(45637837-45637875)
chr4 (175-233)||(56084797-56084855)
chr4 (173-238)||(2599507-2599571)
chr4 (181-230)||(5105711-5105760)
chr4 (173-242)||(7456629-7456698)
chr4 (171-208)||(7656720-7656757)
chr4 (177-230)||(9624784-9624836)
chr4 (185-246)||(29306274-29306334)
chr4 (172-229)||(35519413-35519470)
chr4 (196-237)||(53354113-53354154)
chr4 (169-238)||(54485749-54485817)
chr4 (198-242)||(10564711-10564755)
[»] chr2 (33 HSPs)
chr2 (169-241)||(29241762-29241834)
chr2 (173-242)||(23914584-23914653)
chr2 (169-244)||(35468728-35468803)
chr2 (173-244)||(744897-744968)
chr2 (192-254)||(37242059-37242121)
chr2 (169-238)||(8904952-8905021)
chr2 (169-238)||(11694210-11694279)
chr2 (196-254)||(34423875-34423933)
chr2 (169-238)||(27158688-27158757)
chr2 (172-243)||(2001173-2001244)
chr2 (175-242)||(33201246-33201313)
chr2 (180-234)||(9740606-9740660)
chr2 (180-234)||(30675540-30675594)
chr2 (177-242)||(38502258-38502324)
chr2 (196-238)||(40303020-40303062)
chr2 (169-238)||(11681636-11681705)
chr2 (185-238)||(12599540-12599593)
chr2 (185-238)||(28416973-28417026)
chr2 (169-237)||(44019420-44019486)
chr2 (173-242)||(44821346-44821415)
chr2 (169-236)||(740629-740697)
chr2 (173-241)||(1071666-1071734)
chr2 (175-238)||(11090105-11090168)
chr2 (199-234)||(31054316-31054351)
chr2 (174-241)||(41860273-41860340)
chr2 (172-238)||(6786720-6786785)
chr2 (187-237)||(29353769-29353819)
chr2 (173-242)||(23914783-23914852)
chr2 (189-238)||(34983784-34983833)
chr2 (189-238)||(44856896-44856945)
chr2 (189-237)||(11538398-11538446)
chr2 (174-238)||(12541465-12541529)
chr2 (198-242)||(18612404-18612448)
[»] chr7 (32 HSPs)
chr7 (169-244)||(47437793-47437868)
chr7 (174-230)||(1292086-1292142)
chr7 (169-236)||(7192295-7192365)
chr7 (180-244)||(36925317-36925381)
chr7 (175-242)||(24649982-24650049)
chr7 (169-231)||(43358753-43358815)
chr7 (178-238)||(35338366-35338426)
chr7 (174-237)||(32310772-32310835)
chr7 (190-241)||(38237477-38237528)
chr7 (185-235)||(28069670-28069720)
chr7 (180-242)||(29285585-29285647)
chr7 (184-242)||(38651669-38651727)
chr7 (169-238)||(3434025-3434093)
chr7 (177-246)||(38168312-38168381)
chr7 (192-265)||(39959405-39959478)
chr7 (173-254)||(40358482-40358563)
chr7 (174-246)||(10039618-10039690)
chr7 (169-224)||(45884191-45884246)
chr7 (196-242)||(5318797-5318843)
chr7 (204-242)||(15753632-15753670)
chr7 (189-254)||(2475440-2475505)
chr7 (198-235)||(14774451-14774488)
chr7 (198-235)||(15224904-15224941)
chr7 (169-241)||(30248137-30248210)
chr7 (173-254)||(35079579-35079660)
chr7 (217-254)||(44549321-44549358)
chr7 (192-241)||(47439795-47439844)
chr7 (174-238)||(13640935-13640999)
chr7 (180-238)||(16686291-16686346)
chr7 (180-238)||(17660527-17660582)
chr7 (175-231)||(37250671-37250727)
chr7 (192-228)||(37310610-37310646)
[»] chr3 (32 HSPs)
chr3 (169-244)||(47410919-47410994)
chr3 (139-265)||(50585713-50585839)
chr3 (173-244)||(47411059-47411130)
chr3 (175-242)||(34996052-34996118)
chr3 (179-238)||(36637167-36637226)
chr3 (180-238)||(17583224-17583282)
chr3 (180-238)||(20037594-20037652)
chr3 (169-238)||(2594482-2594551)
chr3 (172-237)||(36643583-36643648)
chr3 (194-246)||(54114368-54114419)
chr3 (114-242)||(7533996-7534123)
chr3 (174-228)||(22934575-22934629)
chr3 (180-234)||(25441590-25441644)
chr3 (180-254)||(37681362-37681436)
chr3 (180-244)||(51103422-51103485)
chr3 (204-255)||(42618143-42618194)
chr3 (175-238)||(47409608-47409671)
chr3 (203-242)||(47968345-47968384)
chr3 (176-238)||(26410408-26410470)
chr3 (176-238)||(26513015-26513077)
chr3 (204-242)||(28170641-28170679)
chr3 (176-238)||(44941342-44941404)
chr3 (196-238)||(49428607-49428649)
chr3 (175-232)||(19578691-19578748)
chr3 (185-238)||(21594492-21594545)
chr3 (196-237)||(35368349-35368390)
chr3 (169-230)||(37761174-37761235)
chr3 (173-238)||(39948894-39948959)
chr3 (174-239)||(40940613-40940678)
chr3 (205-241)||(13867259-13867295)
chr3 (189-237)||(17035256-17035303)
chr3 (206-254)||(41988480-41988528)
[»] chr8 (25 HSPs)
chr8 (169-242)||(11420412-11420485)
chr8 (174-241)||(36067954-36068021)
chr8 (176-237)||(10794644-10794705)
chr8 (173-238)||(4438541-4438606)
chr8 (169-242)||(34151116-34151188)
chr8 (169-241)||(3501385-3501457)
chr8 (185-241)||(31261297-31261353)
chr8 (198-246)||(34103466-34103514)
chr8 (182-229)||(40721253-40721300)
chr8 (172-238)||(1284162-1284228)
chr8 (196-238)||(2442275-2442317)
chr8 (203-265)||(6235470-6235532)
chr8 (200-246)||(17950025-17950071)
chr8 (174-238)||(15920071-15920134)
chr8 (189-232)||(23038511-23038554)
chr8 (180-234)||(4205157-4205211)
chr8 (176-238)||(13206122-13206184)
chr8 (198-252)||(30567791-30567845)
chr8 (200-238)||(39131795-39131833)
chr8 (200-246)||(41372508-41372554)
chr8 (171-236)||(3541186-3541251)
chr8 (205-242)||(11903624-11903661)
chr8 (198-254)||(9183983-9184039)
chr8 (169-229)||(39199232-39199292)
chr8 (169-242)||(45521495-45521569)
[»] chr5 (31 HSPs)
chr5 (172-246)||(29686213-29686287)
chr5 (169-265)||(5856377-5856471)
chr5 (169-238)||(14001117-14001186)
chr5 (176-244)||(19840344-19840412)
chr5 (169-265)||(33322221-33322317)
chr5 (174-254)||(42522698-42522778)
chr5 (175-242)||(42503772-42503839)
chr5 (177-242)||(23085333-23085398)
chr5 (173-238)||(27175177-27175242)
chr5 (174-242)||(29663410-29663478)
chr5 (176-224)||(41863326-41863374)
chr5 (176-242)||(35373291-35373357)
chr5 (189-242)||(833885-833938)
chr5 (169-230)||(14000849-14000910)
chr5 (169-234)||(35588615-35588680)
chr5 (169-237)||(18282264-18282332)
chr5 (180-236)||(29632694-29632750)
chr5 (196-242)||(9051044-9051090)
chr5 (189-242)||(11832448-11832502)
chr5 (174-228)||(28400353-28400407)
chr5 (196-238)||(37142751-37142793)
chr5 (180-230)||(40693304-40693354)
chr5 (189-238)||(17822176-17822225)
chr5 (189-230)||(35627246-35627287)
chr5 (197-238)||(39850432-39850473)
chr5 (200-236)||(5730312-5730348)
chr5 (174-230)||(14205324-14205380)
chr5 (176-247)||(16995482-16995553)
chr5 (210-242)||(17822386-17822418)
chr5 (185-228)||(23991503-23991547)
chr5 (170-233)||(43398255-43398319)
[»] scaffold1017 (1 HSPs)
scaffold1017 (173-238)||(2039-2104)
[»] chr6 (20 HSPs)
chr6 (169-238)||(32279611-32279680)
chr6 (174-242)||(8866860-8866928)
chr6 (174-254)||(4119101-4119181)
chr6 (169-230)||(28220350-28220411)
chr6 (189-246)||(32937786-32937843)
chr6 (201-246)||(34806406-34806451)
chr6 (174-229)||(8872564-8872619)
chr6 (183-234)||(14356673-14356724)
chr6 (169-220)||(14690991-14691042)
chr6 (175-246)||(16436906-16436977)
chr6 (169-232)||(28133479-28133542)
chr6 (204-242)||(1562641-1562679)
chr6 (200-234)||(29729665-29729699)
chr6 (174-227)||(33803894-33803948)
chr6 (189-246)||(3533244-3533301)
chr6 (204-241)||(4578007-4578044)
chr6 (189-238)||(7980524-7980573)
chr6 (175-236)||(22793683-22793744)
chr6 (169-232)||(28219464-28219525)
chr6 (202-238)||(32570377-32570413)
[»] chr1 (29 HSPs)
chr1 (171-244)||(38470996-38471069)
chr1 (175-238)||(10427348-10427411)
chr1 (176-234)||(35632987-35633045)
chr1 (176-265)||(31239073-31239162)
chr1 (176-242)||(52675318-52675384)
chr1 (169-241)||(10448137-10448210)
chr1 (190-234)||(33129438-33129482)
chr1 (175-230)||(10427493-10427548)
chr1 (169-238)||(12294450-12294518)
chr1 (189-238)||(44717358-44717407)
chr1 (201-265)||(35112426-35112490)
chr1 (177-241)||(42825193-42825257)
chr1 (185-240)||(43019494-43019550)
chr1 (204-247)||(2665694-2665737)
chr1 (172-231)||(4790238-4790297)
chr1 (175-238)||(11067088-11067151)
chr1 (175-254)||(16095761-16095839)
chr1 (195-242)||(21966267-21966314)
chr1 (175-226)||(33218406-33218457)
chr1 (195-238)||(38340135-38340178)
chr1 (189-236)||(40780827-40780873)
chr1 (205-243)||(2653377-2653415)
chr1 (171-228)||(41954383-41954440)
chr1 (174-238)||(4968695-4968759)
chr1 (169-237)||(10428040-10428108)
chr1 (176-228)||(10428263-10428315)
chr1 (218-254)||(29522536-29522572)
chr1 (178-230)||(36564079-36564131)
chr1 (175-238)||(38190348-38190412)
[»] scaffold0018 (1 HSPs)
scaffold0018 (189-242)||(36815-36868)
[»] scaffold0047 (1 HSPs)
scaffold0047 (170-238)||(65527-65595)
[»] scaffold0038 (2 HSPs)
scaffold0038 (169-230)||(20848-20909)
scaffold0038 (169-232)||(19962-20023)
[»] scaffold0025 (1 HSPs)
scaffold0025 (173-238)||(11677-11742)
[»] scaffold0455 (1 HSPs)
scaffold0455 (169-232)||(11515-11578)
[»] scaffold0078 (1 HSPs)
scaffold0078 (174-228)||(5843-5897)
[»] scaffold0003 (1 HSPs)
scaffold0003 (180-234)||(226395-226449)
[»] scaffold1777 (1 HSPs)
scaffold1777 (189-237)||(600-648)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 48457978 - 48458140
Alignment:
Q  103 tatctataagtgaatacatgaattttagctgggttatttcacttccaattatacctttnnnnnnncttgactataagaatgctattttgtttgtgttatt 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  48457978 tatctataagtgaatacatgagttttagctgggttatttcacttccaattatacctttaaaaaaacttgactataagaatgctattttgtttgtgttatt 48458077  T
Q  203 aaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48458078 aaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 48458140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 4505804 - 4505881
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgtt 247  Q
    |||||||||| ||| |||||||||| |||| ||| |||||||||||| |||||||||||||| ||||||||||| ||||    
T  4505804 ttgactataataatcctattttgttggtgtcattcaaaaagataagaatttatattatattt-ttatattgttggtgtt 4505881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 20004833 - 20004775
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||    
T  20004833 aatgctattttgttggtgtcattaaaaaatataagaatttatattatatttgttatatt 20004775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 55109877 - 55109954
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    |||| |||||||||| ||||||||| |||||| ||||||  |||||| |||||||||||||| ||||||| |||||||    
T  55109877 ttgattataagaatgttattttgttggtgttactaaaaataataagaatttatattatatttattatattattgatgt 55109954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 28704092 - 28704024
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||||||| ||||| |||| |||||||||||| ||| ||||||| ||||||| ||||||||||    
T  28704092 tataagaatgctatattgttggtgtcattaaaaaagatgagaatttatataatatttgctatattgttg 28704024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 24670095 - 24670164
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||| ||| || ||| ||||||| |||||||||||| ||||||||||||||  ||||||||||    
T  24670095 ctataagaatgttatattttttatgttatttaaaaagataagaatttatattatattttatatattgttg 24670164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 47683475 - 47683534
Alignment:
Q  195 gtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||| ||| ||||| |||||| |||||||||||||||||||||| ||||||| |||||||    
T  47683475 gtgtcattcaaaaatataagaatttatattatatttgttatattattgatgtcgttgaaa 47683534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 4608710 - 4608672
Alignment:
Q  204 aaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  4608710 aaaaagataagaatttatattatatttgttatattgttg 4608672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 24916048 - 24916118
Alignment:
Q  195 gtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 265  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||| ||| |||| ||||||  |||||||||    
T  24916048 gtgtcattaaaaaagaaaagaaattatattatatttgttatattattgttgttattgaaaaagataagtat 24916118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 33997764 - 33997714
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    |||||| |||||| |||||| |||||||||||||||||||||| |||||||    
T  33997764 tgttatgaaaaaaaataagaatttatattatatttgttatattattgatgt 33997714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 38490939 - 38490897
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  38490939 tgttattaaaaaagataagaatttgtattatatttgttatatt 38490897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 1237534 - 1237587
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||| |||| |||||||||||||||| ||||||||||||||  ||||||||||    
T  1237534 ttgttggtgtcattaaaaaagataagaatttatattatattttctatattgttg 1237587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 48458437 - 48458506
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||| || |||| ||||||||| ||||  || ||||| |||||| ||||||||||||||||||||||    
T  48458437 ttgactacaaaaatgttattttgttggtgtcgttcaaaaaaataagaatttatattatatttgttatatt 48458506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 7712960 - 7713024
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||||||| |||||  ||||||||||||||||||   ||| ||||||||||||||||||    
T  7712960 tataataatgctatattgttgatgttattaaaaaagataatgatttttattatatttgttatatt 7713024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 10214390 - 10214326
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtt 233  Q
    ||||||||||||||| ||||||||| |||| ||| ||| | |||||| ||| |||||||||||||    
T  10214390 ttgactataagaatgttattttgttggtgtcattcaaatatataagaatttgtattatatttgtt 10214326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 33389953 - 33389896
Alignment:
Q  185 tattttgtttgtgttattaa----aaaagataagactttatattatatttgttatatt 238  Q
    ||||||||| ||||||||||    ||||||||||| ||||||||||||||||||||||    
T  33389953 tattttgttggtgttattaattcaaaaagataagaatttatattatatttgttatatt 33389896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 47044903 - 47044843
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatt 229  Q
    |||| |||||||||| ||||||| | |||||||| |||||||||||| |||| ||||||||    
T  47044903 ttgattataagaatgttattttgctggtgttattgaaaaagataagaatttaaattatatt 47044843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 6028679 - 6028628
Alignment:
Q  177 aagaatgctattttgtttgtgttattaaaaaagataagactttatattatat 228  Q
    ||||||||||| || || |||| |||||||||||||||| ||||||||||||    
T  6028679 aagaatgctatatttttggtgtcattaaaaaagataagaatttatattatat 6028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 31444993 - 31444954
Alignment:
Q  202 taaaaaagataagactttatattatatttgttatattgtt 241  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  31444993 taaaaaatataagaatttatattatatttgttatattgtt 31444954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 13860198 - 13860144
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatat 228  Q
    ||||||||| | || || ||||||| |||||||||||||||| ||||||||||||    
T  13860198 tataagaataccatattttttgtgtcattaaaaaagataagaatttatattatat 13860144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 26067252 - 26067325
Alignment:
Q  168 cttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||| ||||||||||||||||| |||  ||| |||| |||| ||| || ||||||||||||||||||||| ||||    
T  26067252 cttgcctataagaatgctattt-gttgatgtcattacaaaatatatgaatttatattatatttgttatatcgttg 26067325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 28588392 - 28588350
Alignment:
Q  200 attaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||||||||  ||||||||||| ||||||||||||||    
T  28588392 attaaaaaagataaggatttatattatagttgttatattgttg 28588350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 45637875 - 45637837
Alignment:
Q  205 aaaagataagactttatattatatttgttatattgttga 243  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  45637875 aaaatataagaatttatattatatttgttatattgttga 45637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 56084855 - 56084797
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtt 233  Q
    |||| |||| ||| ||||| |||||||||||||||| |||| ||| |||||||||||||    
T  56084855 ataataatgttatattgttggtgttattaaaaaagaaaagaatttgtattatatttgtt 56084797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 2599571 - 2599507
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||| ||||||| ||||  |||| |||||||| | ||||| ||||||||||||||||||||||    
T  2599571 ctataaggatgctatattgtcagtgtcattaaaaatg-taagaatttatattatatttgttatatt 2599507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 5105760 - 5105711
Alignment:
Q  181 atgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    ||||||||||||| |||| || ||||| ||||||| ||||||||||||||    
T  5105760 atgctattttgttggtgtcatcaaaaaggataagaatttatattatattt 5105711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 7456698 - 7456629
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||| |||| ||| |||||  ||| |||||||||||||| | |||||||||||||  |||||||||||    
T  7456698 ctataataatgttatattgttgatgtcattaaaaaagataaaattttatattatattcattatattgttg 7456629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 7656757 - 7656720
Alignment:
Q  171 gactataagaatgctattttgtttgtgttattaaaaaa 208  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  7656757 gactataagaatgctattttgttggtgtcattaaaaaa 7656720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 9624784 - 9624836
Alignment:
Q  177 aagaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    ||||||| |||||||||||||||||| ||||| |||||| || |||||||||||    
T  9624784 aagaatgttattttgtttgtgttattcaaaaa-ataagaattcatattatattt 9624836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 29306334 - 29306274
Alignment:
Q  185 tattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    |||| ||||||||| ||||||||| |||||  |||||||||||||| ||||||| |||||||    
T  29306334 tattgtgtttgtgt-attaaaaaatataaggatttatattatatttattatatttttgatgt 29306274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 35519413 - 35519470
Alignment:
Q  172 actataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatt 229  Q
    ||||||| |||| |||||| || |||| ||| |||||||||||| |||||||||||||    
T  35519413 actataaaaatgttattttattagtgtcattcaaaaagataagattttatattatatt 35519470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 53354154 - 53354113
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatat 237  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  53354154 tgttattaaaaaagataagaatttttgttatatttgttatat 53354113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 54485749 - 54485817
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| ||| ||||||||||||||| |||| ||| |||||||| |||  |||||||||||| ||||||||    
T  54485749 ttgaccatatgaatgctattttgttggtgtcattcaaaaagattaga-attatattatattagttatatt 54485817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 10564711 - 10564755
Alignment:
Q  198 ttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||||||||| | ||||||||| |||| |||||||||||    
T  10564711 ttattaaaaaagataataatttatattaaatttattatattgttg 10564755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 29241762 - 29241834
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||    
T  29241762 ttgactataagaatgctattttgttagtgttattaaaaaagatatgaatttatagtatatttgttatattgtt 29241834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 23914584 - 23914653
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  23914584 ctataagaatgttatattgtttgtgttattgaaaaagataagaatttatattatatttgttatattgttg 23914653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 35468728 - 35468803
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    ||||||||||||||| ||||||||| |||| | ||||||| |||||| |||||||||||||| |||||||||||||    
T  35468728 ttgactataagaatgttattttgttggtgtcaataaaaaatataagaatttatattatatttattatattgttgat 35468803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 744968 - 744897
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    ||||||||||| ||| ||||| |||||||| |||||||||| | ||||||||||||||| ||||||||||||    
T  744968 ctataagaatgttatattgttggtgttatttaaaaagataaaaatttatattatatttgctatattgttgat 744897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 37242121 - 37242059
Alignment:
Q  192 tttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    ||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  37242121 tttgtgttattcaaaaagataagaatttatgttatattttttatattgttgatgttattgaaa 37242059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 8905021 - 8904952
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||||||||||||||||| | |||| ||| || ||||||||| ||||||| ||||||||||||||    
T  8905021 ttgactataagaatgctattttgctggtgtcattcaacaagataagaatttatatcatatttgttatatt 8904952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 11694279 - 11694210
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| ||||||||||||||||||| |||| ||| ||||| |||| | ||||||||||||||||||||||    
T  11694279 ttgaccataagaatgctattttgttggtgtcattcaaaaatataaaaatttatattatatttgttatatt 11694210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 34423875 - 34423933
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||| || ||||||    
T  34423875 tgttattaaaaaagataagaatttatattatatttagtatattgttgattttattgaaa 34423933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 27158688 - 27158757
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| ||||||||| ||||||||| ||||| || |||| ||||||| ||||||||||| ||||||||||    
T  27158688 ttgaccataagaatgttattttgttagtgttgttcaaaacgataagaatttatattatagttgttatatt 27158757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 2001173 - 2001244
Alignment:
Q  172 actataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttga 243  Q
    |||||||||||  ||| |||||||||| ||| |||||| ||||| |||||||||||||| |||||| |||||    
T  2001173 actataagaatattatattgtttgtgtcatttaaaaagttaagaatttatattatattttttatatcgttga 2001244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 33201246 - 33201313
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||||||||||||  ||| ||| | || ||||||| ||| ||||||||||||||||||||||    
T  33201246 ataagaatgctattttgttgatgtcattcagaacgataagaatttgtattatatttgttatattgttg 33201313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 9740660 - 9740606
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    |||||||| ||||| ||||||||||||| ||||||| ||| ||||||||||||||    
T  9740660 aatgctatattgttagtgttattaaaaatgataagaatttttattatatttgtta 9740606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 30675594 - 30675540
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    |||| ||| ||||| |||||||||||||| |||||| ||||||||||||||||||    
T  30675594 aatgttatattgttggtgttattaaaaaatataagagtttatattatatttgtta 30675540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 38502258 - 38502324
Alignment:
Q  177 aagaatgctattttgtttgtgttattaaaaaagataagactttatattata-tttgttatattgttg 242  Q
    |||||||||||||| || || | ||| |||||||||||| ||||||||||| |||||||||||||||    
T  38502258 aagaatgctattttattggtatcattcaaaaagataagaatttatattatattttgttatattgttg 38502324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 40303062 - 40303020
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  40303062 tgttattaaaaaagataagaatttttattatatttgttatatt 40303020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 11681705 - 11681636
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||||||||||||||  || |||| ||| ||||| |||| | ||||||||||||||||||||||    
T  11681705 ttgaccataagaatgctatttgattggtgtcattcaaaaatataaaaatttatattatatttgttatatt 11681636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 12599540 - 12599593
Alignment:
Q  185 tattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||  ||| ||||| |||||||||| ||||||||||||||||||||||    
T  12599540 tattttgttgatgtcattaagaaagataagaatttatattatatttgttatatt 12599593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 28416973 - 28417026
Alignment:
Q  185 tattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||| |||| ||| |||||||||||| ||||||||||| ||||||||||    
T  28416973 tattttgttggtgtcattcaaaaagataagaatttatattatagttgttatatt 28417026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 44019420 - 44019486
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    ||||| |||| |||||||||||||  |||| ||||||||| |||||| |||||||||||||| ||||||    
T  44019420 ttgaccataaaaatgctattttgt--gtgtcattaaaaaaaataagaatttatattatatttattatat 44019486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 44821346 - 44821415
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||| |||||||| ||||| |||||| | |||||||||| | ||||| |||||||| |||||||||||    
T  44821346 ctataaaaatgctatattgttagtgttaattaaaaagataaaaatttattttatatttattatattgttg 44821415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 740697 - 740629
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgtta-ttaaaaaagataagactttatattatatttgttata 236  Q
    |||||||||||||||| |||||||| |||| | |||||| | |||||| |||||||||||| |||||||    
T  740697 ttgactataagaatgcaattttgttggtgtcatttaaaagaaataagaatttatattatatgtgttata 740629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 1071666 - 1071734
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    |||||| |||||||  ||||| | |||||  ||||| |||||| |||||||||||||||||||||||||    
T  1071666 ctataataatgctaaattgttggcgttatagaaaaaaataagaatttatattatatttgttatattgtt 1071734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 11090105 - 11090168
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||| |||||| ||||||| || | ||| |||||||||||| |||||||||||||| |||||||    
T  11090105 ataacaatgctgttttgttggtttcattcaaaaagataagaatttatattatatttattatatt 11090168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 31054316 - 31054351
Alignment:
Q  199 tattaaaaaagataagactttatattatatttgtta 234  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31054316 tattaaaaaagataagaatttatattatatttgtta 31054351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 41860340 - 41860273
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    |||||||||||||| |||||  |||  || |||||||||||| |||||||||| |||||| |||||||    
T  41860340 tataagaatgctatattgttgatgtcctttaaaaagataagaatttatattatgtttgttttattgtt 41860273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 6786785 - 6786720
Alignment:
Q  172 actataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||||||||||| |||| ||| |||||||| | | |||||| |||| ||||||||||    
T  6786785 actataagaatgctattttgttggtgtcatttaaaaagattaaaatttatactata-ttgttatatt 6786720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 29353819 - 29353769
Alignment:
Q  187 ttttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    |||||||  ||||||||||||| | |||| |||||||||||||||||||||    
T  29353819 ttttgttgatgttattaaaaaatacaagaatttatattatatttgttatat 29353769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 23914783 - 23914852
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||| ||| ||||| ||  |||| ||||| |||||| |||||||||| |||||||| ||||||    
T  23914783 ctataagaatgttatattgttggtaatattgaaaaatataagaatttatattatgtttgttatcttgttg 23914852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 34983784 - 34983833
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||||||||||||||| || | ||| ||||||||||||||||||    
T  34983784 ttgttggtgttattaaaaaagaaaataatttttattatatttgttatatt 34983833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 44856945 - 44856896
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||||||| |||||||||||| ||| | ||||||||||||||||    
T  44856945 ttgttggtgttatttaaaaagataagaatttttgttatatttgttatatt 44856896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 11538398 - 11538446
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    ||||| ||||||||||||||||||||| ||| | ||||||||| |||||    
T  11538398 ttgttggtgttattaaaaaagataagaatttttgttatatttgctatat 11538446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 12541465 - 12541529
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||| |||||| ||  ||| ||||||||| |||| | ||||||||||| ||||||||||    
T  12541465 tataagaatgttattttattgatgtcattaaaaaatataataatttatattatacttgttatatt 12541529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 18612448 - 18612404
Alignment:
Q  198 ttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||| ||||||||| ||  |||||||||||||||||||||||||    
T  18612448 ttatttaaaaagatatgaacttatattatatttgttatattgttg 18612404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 47437868 - 47437793
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    ||||||||||||||   |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  47437868 ttgactataagaatttgattttgttggtgttattaaaaaagataagaatttatattatattttttatattgttgat 47437793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 1292142 - 1292086
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    |||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||||    
T  1292142 tataagaatgctatattgttggtgtcattaaaaaagataagaatttatattatattt 1292086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 7192365 - 7192295
Alignment:
Q  169 ttgactataagaatgcta---ttttgtttgtgttattaaaaaagataagactttatattatatttgttata 236  Q
    ||||||||||||||| ||   |||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  7192365 ttgactataagaatgttaattttttgtttgtgttatttaaaaagataagaatttatattatatttattata 7192295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 36925381 - 36925317
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    |||| |||||||||  ||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  36925381 aatgttattttgttgttgttattcaaaaagataagaatttatgttatatttgttatattgttgat 36925317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 24649982 - 24650049
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||| ||||||||  || | ||| |||||||||||| ||||||||||||||||||||||||||    
T  24649982 ataagaatgttattttgtcggtctcattcaaaaagataagaatttatattatatttgttatattgttg 24650049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 43358753 - 43358815
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttg 231  Q
    |||||||||| |||| ||||||||| |||| ||| |||||||||||| |||||||||||||||    
T  43358753 ttgactataaaaatgttattttgttggtgtaatttaaaaagataagaatttatattatatttg 43358815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 35338366 - 35338426
Alignment:
Q  178 agaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||| ||| ||||| |||| |||||||||||||||| |||||||||||||| |||||||    
T  35338366 agaatgttatattgttggtgtcattaaaaaagataagaatttatattatatttattatatt 35338426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 32310772 - 32310835
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    |||||||||| ||||||||| || | |||||||||||||||| ||||||| |||||| ||||||    
T  32310772 tataagaatgttattttgttagtctcattaaaaaagataagaatttatataatattttttatat 32310835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 38237528 - 38237477
Alignment:
Q  190 tgtttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    |||| |||| ||| |||||||||||| |||||||||||||||||||||||||    
T  38237528 tgttggtgtcattgaaaaagataagaatttatattatatttgttatattgtt 38237477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 28069720 - 28069670
Alignment:
Q  185 tattttgtttgtgttattaaaaaagataagactttatattatatttgttat 235  Q
    ||||||||| |||| ||| |||||||||||| |||||||||||||||||||    
T  28069720 tattttgttagtgtcattcaaaaagataagaatttatattatatttgttat 28069670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 29285585 - 29285647
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||| ||| ||||| |||||||| ||||| |||||| |||||||||||||||||| |||||||    
T  29285585 aatgttatattgttggtgttattgaaaaacataagaatttatattatatttgttaaattgttg 29285647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 38651669 - 38651727
Alignment:
Q  184 ctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||||||| ||| |||||||||||| || |||| ||| ||||||||||||||    
T  38651669 ctattttgtttgtgtcattcaaaaagataagaattcatatcataattgttatattgttg 38651727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 3434025 - 3434093
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||||||||| ||||||||| | || ||| |||  ||||||| ||||||||||||||||||||||    
T  3434025 ttgactataagaatgttattttgttagggtcattcaaat-gataagaatttatattatatttgttatatt 3434093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 38168312 - 38168381
Alignment:
Q  177 aagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    ||||||| ||| |||||||||| ||| || ||||||||| ||| ||||||||||| ||||||| ||||||    
T  38168312 aagaatgttatattgtttgtgtcatttaataagataagagtttgtattatatttgctatattgctgatgt 38168381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 39959405 - 39959478
Alignment:
Q  192 tttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 265  Q
    ||||||| ||| ||||| |||| | |||||||||||||||||||||| ||||||| | |||||  |||||||||    
T  39959405 tttgtgtcattcaaaaaaataataatttatattatatttgttatattattgatgtcgatgaaaaagataagtat 39959478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 40358482 - 40358563
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||||| |||| ||| |||||  |||||||||||||||||||| ||| | | |||||||||||||| ||| ||| |||||||    
T  40358482 ctataacaatgttatattgttgatgttattaaaaaagataagaatttttgtcatatttgttatattattgttgtcgttgaaa 40358563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 10039690 - 10039618
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    |||||| ||| ||||||||| |||| |||| ||||||||| | ||||||||||||||  |||||| |||||||    
T  10039690 tataagcatgttattttgttggtgtcattagaaaagataaaaatttatattatattttctatattattgatgt 10039618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 45884191 - 45884246
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatatt 224  Q
    ||||||||||||||| |||||| |  ||||||||||||||||||| | ||||||||    
T  45884191 ttgactataagaatgttattttatcagtgttattaaaaaagataaaaatttatatt 45884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 5318797 - 5318843
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||||  |||||| |||||||||| |||||||||||||||    
T  5318797 tgttattaaaaagtataagaatttatattatgtttgttatattgttg 5318843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 15753670 - 15753632
Alignment:
Q  204 aaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  15753670 aaaaatataaaactttatattatatttgttatattgttg 15753632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 2475440 - 2475505
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    ||||| |||||| |||||||||||||| ||| |||||||||| ||| ||| ||| ||| |||||||    
T  2475440 ttgttggtgttactaaaaaagataagaatttttattatatttattacattattgttgtcgttgaaa 2475505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 14774488 - 14774451
Alignment:
Q  198 ttattaaaaaagataagactttatattatatttgttat 235  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  14774488 ttattaaaaaagataagaatttatataatatttgttat 14774451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 15224941 - 15224904
Alignment:
Q  198 ttattaaaaaagataagactttatattatatttgttat 235  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  15224941 ttattaaaaaagataagaatttatataatatttgttat 15224904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 30248137 - 30248210
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaag-ataagactttatattatatttgttatattgtt 241  Q
    |||||| ||| |||||||||  |||  |||||||||||||  | |||| |||||||||||||||||||||||||    
T  30248137 ttgactttaataatgctattacgttgttgttattaaaaaaatacaagaatttatattatatttgttatattgtt 30248210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 35079660 - 35079579
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||||| |||| ||| |||||  ||| |||||||||||||||| ||| | ||| |||||||||||| ||| ||| |||||||    
T  35079660 ctataataatgttatattgttgttgtaattaaaaaagataagaatttttgttacatttgttatattattgttgtcgttgaaa 35079579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 44549358 - 44549321
Alignment:
Q  217 tttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  44549358 tttatattatatttgttatattattgatgttattgaaa 44549321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 47439844 - 47439795
Alignment:
Q  192 tttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    ||||||| ||| |||||||||| | |||||||||||||| ||||||||||    
T  47439844 tttgtgtcattcaaaaagataataatttatattatatttattatattgtt 47439795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 13640935 - 13640999
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||| ||| ||||| || |||||||||||||| | | ||| ||||||||||||||||||    
T  13640935 tataataatgttatattgttggttttattaaaaaagatgataatttttattatatttgttatatt 13640999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 16686346 - 16686291
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||||| || | ||||||||||||   |||| ||||||||||||||||||||||    
T  16686346 aatgctattttattggcgttattaaaaaa---aagaatttatattatatttgttatatt 16686291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 17660582 - 17660527
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||||| || | ||||||||||||   |||| ||||||||||||||||||||||    
T  17660582 aatgctattttattggcgttattaaaaaa---aagaatttatattatatttgttatatt 17660527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 37250671 - 37250727
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttg 231  Q
    |||||||| |||| |||||  ||||||||||||||| |||| ||| |||||||||||    
T  37250671 ataagaattctatattgttgttgttattaaaaaagacaagaatttttattatatttg 37250727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 37310610 - 37310646
Alignment:
Q  192 tttgtgttattaaaaaagataagactttatattatat 228  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  37310610 tttgtgtcattaaaaaagataagaatttatattatat 37310646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 47410919 - 47410994
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  47410919 ttgactataagaattatattttgttggtgttattaaaaaagataagaatttatattataattgttatgttgttgat 47410994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 50585713 - 50585839
Alignment:
Q  139 tttcacttccaattatacctttnnnnnnncttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||||||| |||        ||||| ||||||||  ||||||||| |||||||| |||||||||| | ||||||||||||||||||||||    
T  50585713 tttcacttccaattatacttttaactaaatttgacaataagaatattattttgttggtgttattcaaaaagataaaaatttatattatatttgttatatt 50585812  T
Q  239 gttgatgttgttgaaacggataagtat 265  Q
    |||||| |  ||||||  |||||||||    
T  50585813 gttgatatccttgaaaaagataagtat 50585839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 47411059 - 47411130
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  47411059 ctataagaattatattttgttggtgttattaaaaaagataagaatttatattataattgttatgttgttgat 47411130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 34996118 - 34996052
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| ||||||||    
T  34996118 ataagaatgctattttgttggtgtcattaaaaa-gataagagtttatattatatttgttgtattgttg 34996052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 36637167 - 36637226
Alignment:
Q  179 gaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  36637167 gaatgatatattgtttgtgttattaaaaaagataagaatttttattatatttgttatatt 36637226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 17583224 - 17583282
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||| ||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  17583224 aatgttatattgttggtgttattaaaaaagataagaatttttattatatttgttatatt 17583282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 20037652 - 20037594
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||| ||||||||||||||||||||| ||  ||||||||||| ||||||    
T  20037652 aatgctattttgttggtgttattaaaaaagataagaattattattatatttgatatatt 20037594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 2594482 - 2594551
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||| |||| ||||||| | |||| ||| |||||||||||| ||||||||||||||||||||||    
T  2594482 ttgaccataacaatgttattttgctggtgtcattcaaaaagataagaatttatattatatttgttatatt 2594551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 36643648 - 36643583
Alignment:
Q  172 actataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    |||||||||||| ||||||||| || | ||| |||| ||||||| |||||||||||||||||||||    
T  36643648 actataagaatgttattttgttggtatcattcaaaacgataagaatttatattatatttgttatat 36643583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 54114368 - 54114419
Alignment:
Q  194 tgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  54114368 tgtgttattaaaaaa-ataagaatttatattatatttgttatatagttgatgt 54114419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 7533996 - 7534123
Alignment:
Q  114 gaatacatgaattttagctgggttatttcacttccaattatacctttnnnnnnncttgactataagaatgctattttgtttgtgttattaaaaaagataa 213  Q
    |||||||||| |||||||||   | ||||||||||||||||||| ||        ||| ||||||||| ||||  ||||||||||| || ||||| ||||    
T  7533996 gaatacatgatttttagctgacct-tttcacttccaattatacccttgaacaaatttgtctataagaaagctacattgtttgtgtttttcaaaaatataa 7534094  T
Q  214 gactttatattatatttgttatattgttg 242  Q
    || | |||||||||||| |||||||||||    
T  7534095 gaatgtatattatatttattatattgttg 7534123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 22934629 - 22934575
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatat 228  Q
    ||||||||| | || || |||||||||||||||||||||||| ||||||||||||    
T  22934629 tataagaataccatattttttgtgttattaaaaaagataagaatttatattatat 22934575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 25441644 - 25441590
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    |||||||| ||||| ||| ||||||||||||||| | ||||||||||||||||||    
T  25441644 aatgctatattgttggtgatattaaaaaagataataatttatattatatttgtta 25441590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 37681362 - 37681436
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||| ||| ||||| ||| ||||||||||||||||  |||||||||||||||||| ||| ||| |||| ||||||    
T  37681362 aatgttatattgttggtggtattaaaaaagataaggatttatattatatttgttaaattattgttgttattgaaa 37681436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 51103422 - 51103485
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    |||| ||||||||| ||||||| |||||| ||||||  |||||||||||||||||||||| ||||    
T  51103422 aatgttattttgttggtgttat-aaaaaatataagaacttatattatatttgttatattgctgat 51103485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 42618143 - 42618194
Alignment:
Q  204 aaaaagataagactttatattatatttgttatattgttgatgttgttgaaac 255  Q
    |||||||||||| |||||||||||||||||| ||||||| |||  |||||||    
T  42618143 aaaaagataagaatttatattatatttgttacattgttggtgtcattgaaac 42618194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 47409608 - 47409671
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||| ||||||||  |||| ||  |||||||||||| ||||||||||| ||||||||||    
T  47409608 ataagaatgttattttgtcggtgtcatccaaaaagataagaatttatattatacttgttatatt 47409671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 47968345 - 47968384
Alignment:
Q  203 aaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  47968345 aaaaaagataagaatttatattacatttgttatattgttg 47968384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 26410408 - 26410470
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||  ||||||||| |||| |||||||||||||||| ||||||| ||| ||| ||||||    
T  26410408 taagaattgtattttgttggtgtcattaaaaaagataagaatttatatcatagttgatatatt 26410470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 26513077 - 26513015
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||| ||| ||||| || |||| ||||||||||||| ||| ||||||||| ||||||||    
T  26513077 taagaatgttatattgttcgttttatcaaaaaagataagaatttttattatattagttatatt 26513015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 28170641 - 28170679
Alignment:
Q  204 aaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  28170641 aaaaagataagaatttatattatatttgttacattgttg 28170679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 44941342 - 44941404
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||| ||||| ||||| || |||| ||||||| ||| |||||||||| |||||||    
T  44941342 taagaatgctatattgttggtgttgttgaaaatgataagaatttttattatatttattatatt 44941404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 49428607 - 49428649
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||||||||| ||| | ||||||||||||||||    
T  49428607 tgttattaaaaaagataagaatttttcttatatttgttatatt 49428649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 19578691 - 19578748
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgt 232  Q
    |||| |||| ||| ||||| |||||||||||||| |||||| ||| ||||||||||||    
T  19578691 ataataatgttatattgttggtgttattaaaaaatataagagtttttattatatttgt 19578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 21594545 - 21594492
Alignment:
Q  185 tattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||| |||| | | |||||||| ||| ||||||||||||||||||||||    
T  21594545 tattttgttggtgtcactcaaaaagatgagaatttatattatatttgttatatt 21594492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 35368349 - 35368390
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatat 237  Q
    |||||||||||||||||||| ||| || ||||||||||||||    
T  35368349 tgttattaaaaaagataagaatttttaatatatttgttatat 35368390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 37761174 - 37761235
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    |||| |||||||||| ||||||  | |||||||| |||||||||||| ||||||| ||||||    
T  37761174 ttgattataagaatgttattttactggtgttatttaaaaagataagaatttatataatattt 37761235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 39948894 - 39948959
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||| |||| ||| ||||| || || |||||||| |||||| ||| ||||||||||||||||||    
T  39948894 ctataataatgttatattgttggtcttgttaaaaaaaataagaatttttattatatttgttatatt 39948959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 40940613 - 40940678
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattg 239  Q
    ||||| |||||||| | ||| |||| ||||||||| ||||||| |||||||||||||  |||||||    
T  40940613 tataaaaatgctatctagttagtgtcattaaaaaatataagaccttatattatattttctatattg 40940678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 13867259 - 13867295
Alignment:
Q  205 aaaagataagactttatattatatttgttatattgtt 241  Q
    |||| |||||| |||||||||||||||||||||||||    
T  13867259 aaaatataagaatttatattatatttgttatattgtt 13867295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 17035256 - 17035303
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    ||||| ||||||||||||||||||| ||||| | |||||||||||||||    
T  17035256 ttgttggtgttattaaaaaagataa-actttttgttatatttgttatat 17035303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 41988480 - 41988528
Alignment:
Q  206 aaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||||||||| ||||||||||| || ||||||||||||| || ||||||    
T  41988480 aaagataagaatttatattatacttattatattgttgatattattgaaa 41988528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 11420485 - 11420412
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||||||  ||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||    
T  11420485 ttgactataagaatattattttgttggtgttgttcaaaaagataagaatttatattatatttgttatattgttg 11420412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 36067954 - 36068021
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    ||||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||| |||||||||    
T  36067954 tataagaatgctattttgtttatgttatttaaaaagataagaacttatattatatttgctatattgtt 36068021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 10794705 - 10794644
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    |||||||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||||    
T  10794705 taagaatgctattttgttagtgttattcaaaaagataagaatttatgttatatttgttatat 10794644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 4438541 - 4438606
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||||| ||| ||||| || | |||||||||||||||| ||||||||||||||||||||||    
T  4438541 ctataagaatgttatattgttggtatcattaaaaaagataagaatttatattatatttgttatatt 4438606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 34151116 - 34151188
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||| ||| |||||||||| |||| ||| |||||||||||| |||||||||||||| |||||||||||    
T  34151116 ttgactataataatcctattttgttggtgtcatttaaaaagataagaatttatattatattt-ttatattgttg 34151188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 3501457 - 3501385
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    |||||||||| |||| ||||||||| |||| ||| |||| |||||||  ||||||||||||||||||||||||    
T  3501457 ttgactataaaaatgttattttgttggtgtcattcaaaatgataagaacttatattatatttgttatattgtt 3501385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 31261353 - 31261297
Alignment:
Q  185 tattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    |||||||||  ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  31261353 tattttgttgatgtcattaaaaaagataagaaattatattatatttgttatattgtt 31261297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 34103466 - 34103514
Alignment:
Q  198 ttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  34103466 ttattaaaaaatataaaaatttatattatatttgttatattgttgatgt 34103514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 40721253 - 40721300
Alignment:
Q  182 tgctattttgtttgtgttattaaaaaagataagactttatattatatt 229  Q
    |||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  40721253 tgctattttgttggtgttattaaaaaaggtaagaatttatattatatt 40721300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 1284162 - 1284228
Alignment:
Q  172 actataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||| ||||||||| |||| ||| |||||||||  | ||||| ||||||||||||||||    
T  1284162 actataagaatgttattttgttagtgtcattcaaaaagatacaaatttatgttatatttgttatatt 1284228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 2442275 - 2442317
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||||||| | ||||||||||||||||||||||    
T  2442275 tgttattaaaaaagataaaaatttatattatatttgttatatt 2442317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 6235532 - 6235470
Alignment:
Q  203 aaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 265  Q
    |||||| | |||| ||||| ||||||||||||||||||||||||| ||||||  |||||||||    
T  6235532 aaaaaaaaaaagaatttattttatatttgttatattgttgatgttattgaaaaagataagtat 6235470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 17950025 - 17950071
Alignment:
Q  200 attaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||    
T  17950025 attaaaaaaaataaggatttatattatatttgttatattgttgatgt 17950071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 15920071 - 15920134
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||| ||| ||||| |||||||||||| |||||||| ||| ||||||||||||||||||    
T  15920071 tataataatgttatattgttggtgttattaaaa-agataagaatttttattatatttgttatatt 15920134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 23038511 - 23038554
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgt 232  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  23038511 ttgttggtgttattaaaaaaggtaagaatttatattatatttgt 23038554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 4205211 - 4205157
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    |||| ||| ||||| ||| |||||||||||||| || ||||||||||||||||||    
T  4205211 aatgttatattgttcgtgatattaaaaaagataggaatttatattatatttgtta 4205157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 13206184 - 13206122
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||| ||| ||||| |||||| | |||||||||||| ||| || |||||||||||||||    
T  13206184 taagaatgttatattgttggtgttaatgaaaaagataagaatttttaatatatttgttatatt 13206122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 30567845 - 30567791
Alignment:
Q  198 ttattaaaaaagataagactttatattatatttgttatattgttgatgttgttga 252  Q
    |||||||||||||||| | |||||||||||||||||| ||| ||| |||| ||||    
T  30567845 ttattaaaaaagataataatttatattatatttgttaaattattgttgttattga 30567791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 39131795 - 39131833
Alignment:
Q  200 attaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  39131795 attaaaaaagataagaatatatattatatttgttatatt 39131833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 41372508 - 41372554
Alignment:
Q  200 attaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    ||||||||| |||||| |||||||||||| |||||||||| ||||||    
T  41372508 attaaaaaaaataagaatttatattatatctgttatattgctgatgt 41372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 3541186 - 3541251
Alignment:
Q  171 gactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttata 236  Q
    ||||||||||||  ||||||||| |||| ||| ||||||||||||   || |||||||||||||||    
T  3541186 gactataagaatattattttgttggtgtcattcaaaaagataagaaaataaattatatttgttata 3541251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 11903624 - 11903661
Alignment:
Q  205 aaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  11903624 aaaagataagagtttatattatatttgatatattgttg 11903661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 9184039 - 9183983
Alignment:
Q  198 ttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||||||||| ||||||  |||||||||||||||||||||  ||| |||| ||||||    
T  9184039 ttattaaaaatgataaggatttatattatatttgttatataattgttgttattgaaa 9183983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 39199232 - 39199292
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatt 229  Q
    ||||| ||| ||||| ||||||||| ||| |||| |||||||||| | |||||||||||||    
T  39199232 ttgacaatatgaatgttattttgttagtgatattcaaaaagataataatttatattatatt 39199292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 45521495 - 45521569
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttatt--aaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||| ||||||| | ||||||||  |||||||  |||||| |||| | ||||||||||||||||||||||||||    
T  45521495 ttgactgtaagaattcaattttgttgatgttattcaaaaaaaaataaaa-tttatattatatttgttatattgttg 45521569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 29686287 - 29686213
Alignment:
Q  172 actataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    |||||||||||| || ||| || |||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  29686287 actataagaatgttaatttattggtgtcattcaaaaagataagaatttatattatatttgttatattgttgatgt 29686213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 5856471 - 5856377
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 265  Q
    ||||| ||||||||||||||||||| |||| ||| |||||||||||| ||  ||| |||||||||||||||||| | |  ||||||| |||||||||    
T  5856471 ttgaccataagaatgctattttgttggtgtcatttaaaaagataagaatt--tatgatatttgttatattgttggtatcattgaaacagataagtat 5856377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 14001186 - 14001117
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| ||||||||| |||||||||  ||| ||| |||||||||||| ||||||||||||||||||||||    
T  14001186 ttgacaataagaatgttattttgttgatgtcattcaaaaagataagaatttatattatatttgttatatt 14001117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 19840344 - 19840412
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    |||||||| ||  ||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||    
T  19840344 taagaatgatacattgtttgtgttattaaaaaagataagaatttttattatatttattatattattgat 19840412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 33322221 - 33322317
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 265  Q
    |||||||| ||||||||||||||||  | | ||| |||||  ||||| |||||||||||||||||||||||||| | | |||||||  |||||||||    
T  33322221 ttgactattagaatgctattttgttgttatcattcaaaaaattaagaatttatattatatttgttatattgttggtatggttgaaaacgataagtat 33322317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 42522778 - 42522698
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    ||||| |||| ||| ||||| |||||||||||||| |||||| ||| |||||||||||||||||| ||| |||| ||||||    
T  42522778 tataataatgttatattgttggtgttattaaaaaatataagaatttttattatatttgttatattattgttgttattgaaa 42522698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 42503772 - 42503839
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||| |||||||||||||| |||| |||  ||||||||||| |||||||||||||| |||||||||||    
T  42503772 ataataatgctattttgttggtgtcattttaaaagataagattttatattatatttattatattgttg 42503839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 23085398 - 23085333
Alignment:
Q  177 aagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||| ||||||||| |||| | | ||||| |||||| ||||||||||||||||||||||||||    
T  23085398 aagaatgttattttgttggtgtcagttaaaaaaataagaatttatattatatttgttatattgttg 23085333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 27175177 - 27175242
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||| |||| ||| ||||| ||||||||||||||||||||| ||| | ||||||||||||||||    
T  27175177 ctataataatgttatattgttggtgttattaaaaaagataagaatttttgttatatttgttatatt 27175242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 29663410 - 29663478
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||||||| || ||  ||| |||||||||||| | | ||||||||||||||||||||||||||    
T  29663410 tataagaatgctatattattgctgtcattaaaaaagattataatttatattatatttgttatattgttg 29663478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 41863374 - 41863326
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatatt 224  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  41863374 taagaatgctattttgttggtgtcattaaaaaagataagaatttatatt 41863326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 35373291 - 35373357
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||| ||| || || |||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  35373291 taagaatgatatattattggtgttatagaaaaagataagaatttttattatatttgttatattgttg 35373357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 833885 - 833938
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||| |||| ||| |||||||||||| |||| |||||||||||||||||||||    
T  833885 ttgttggtgtcattcaaaaagataagaatttagattatatttgttatattgttg 833938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 14000910 - 14000849
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    |||||||||  ||||| |||||||| |||| |||||||||||||| | ||||||||||||||    
T  14000910 ttgactatagaaatgcaattttgttggtgtcattaaaaaagataaaaatttatattatattt 14000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 35588680 - 35588615
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    ||||| |||| ||||||||| |||| || ||||| |||||||||||| |||||||||| |||||||    
T  35588680 ttgaccataaaaatgctattatgttagtattattcaaaaagataagaatttatattatgtttgtta 35588615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 18282332 - 18282264
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    ||||||||||||||  ||||||||| |||| ||| |||||||||| | ||| |||| ||||||||||||    
T  18282332 ttgactataagaatattattttgttggtgtcattcaaaaagataaaaatttgtattctatttgttatat 18282264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 29632694 - 29632750
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttata 236  Q
    |||| ||||||||| |||| ||| |||||||||||| |||||||| |||||||||||    
T  29632694 aatgttattttgttggtgtcatttaaaaagataagaatttatattttatttgttata 29632750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 9051044 - 9051090
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||||||||| |||||||| ||| | ||||||||||||||||||||    
T  9051044 tgttattaaaatagataagaatttttgttatatttgttatattgttg 9051090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 11832448 - 11832502
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatat-ttgttatattgttg 242  Q
    ||||| |||| |||||||||||||||| |||||||||||| || |||||||||||    
T  11832448 ttgttggtgtcattaaaaaagataagaatttatattatatatttttatattgttg 11832502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 28400353 - 28400407
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatat 228  Q
    ||||||||| |||| || ||||||| ||| |||||||||||| ||||||||||||    
T  28400353 tataagaattctatattttttgtgtgattcaaaaagataagaatttatattatat 28400407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 37142751 - 37142793
Alignment:
Q  196 tgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||| |||||||||||| || |||||||||||||||||||    
T  37142751 tgttatttaaaaagataagaattaatattatatttgttatatt 37142793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 40693354 - 40693304
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    |||| |||| |||| |||||||||||||| |||||| ||||||||||||||    
T  40693354 aatgttattatgttggtgttattaaaaaatataagaatttatattatattt 40693304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 17822225 - 17822176
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||||||| |||||||||||| ||| | ||||||||||||||||    
T  17822225 ttgttggtgttattgaaaaagataagaatttttgttatatttgttatatt 17822176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 35627287 - 35627246
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    |||||||||| ||||||||| |||||| ||||||||||||||    
T  35627287 ttgtttgtgtcattaaaaaaaataagaatttatattatattt 35627246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 39850432 - 39850473
Alignment:
Q  197 gttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  39850432 gttattaaaaatgataagaatttatattatatttattatatt 39850473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 5730348 - 5730312
Alignment:
Q  200 attaaaaaagataagactttatattatatttgttata 236  Q
    |||||||||||||||| |||||||||||||| |||||    
T  5730348 attaaaaaagataagaatttatattatatttattata 5730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 14205380 - 14205324
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    ||||||||| |||| || || |||| ||| |||||||||||| ||||||||||||||    
T  14205380 tataagaatactatatttttggtgtcatttaaaaagataagaatttatattatattt 14205324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 16995482 - 16995553
Alignment:
Q  176 taagaatgctattttgtttgtgttatt-aaaaaagataagactttatattatatttgttatattgttgatgtt 247  Q
    |||||||| ||| ||||| |||| ||| ||||||||||| | ||||||| |||||||||||||| ||||||||    
T  16995482 taagaatgttatattgttagtgtcattcaaaaaagataacaatttatat-atatttgttatattattgatgtt 16995553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 17822386 - 17822418
Alignment:
Q  210 ataagactttatattatatttgttatattgttg 242  Q
    |||||| ||||||||||||||||||||||||||    
T  17822386 ataagaatttatattatatttgttatattgttg 17822418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 23991503 - 23991547
Alignment:
Q  185 tattttgtttgtgttattaaaaaagataag-actttatattatat 228  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||    
T  23991503 tattttgttggtgttattaaaaaagataagaattttatattatat 23991547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 43398319 - 43398255
Alignment:
Q  170 tgactataagaatgctattttgtttgtgttattaaaaaagataa-gactttatattatatttgtt 233  Q
    |||||||||||||| || |||||  ||||||||||||||| ||| || ||||| |||||||||||    
T  43398319 tgactataagaatgttagtttgtcggtgttattaaaaaaggtaaggaatttatgttatatttgtt 43398255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 2104 - 2039
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||| |||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  2104 ctataataatgttatattgtttgtgttattaaaaaagataagaatttttattatatttgttatatt 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 32279680 - 32279611
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||| |||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  32279680 ttgaccataaaaatgttattttgttggtgtcattaaaaaagataagaatttatattatatttgttatatt 32279611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 8866928 - 8866860
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||| | | ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  8866928 tataagaatgttttattgttggtgtcattaaaaaagataagaatttatattatatttgttatattgttg 8866860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 4119181 - 4119101
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    ||||| |||||| | |||||||||| |||||||||||| ||| |||||||| |||||||||| |||||| |||| ||||||    
T  4119181 tataataatgctttattgtttgtgtcattaaaaaagattagaatttatattgtatttgttatgttgttggtgttattgaaa 4119101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 28220411 - 28220350
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    ||||||||||||||| ||||| |||| ||| |||  ||||||||||| ||||||||||||||    
T  28220411 ttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatattt 28220350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 32937786 - 32937843
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    ||||| |||||| |||||||| ||||| |||||||||||||||||| ||| |||||||    
T  32937786 ttgttggtgttactaaaaaaggtaagaatttatattatatttgttagattattgatgt 32937843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 34806451 - 34806406
Alignment:
Q  201 ttaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  34806451 ttaaaaaagataagaatttatattatagttgttatattgttaatgt 34806406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 8872619 - 8872564
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatt 229  Q
    |||||||||| | | ||||| |||| |||||||||||||||| |||||||||||||    
T  8872619 tataagaatgttttattgttggtgtcattaaaaaagataagaatttatattatatt 8872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 14356724 - 14356673
Alignment:
Q  183 gctattttgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    ||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||    
T  14356724 gctatattgtttgtattattgaaaaatataagaatttatattatatttgtta 14356673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 14691042 - 14690991
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagacttta 220  Q
    ||||| ||||||||||||||||||| |||||||  |||||||||||| ||||    
T  14691042 ttgacaataagaatgctattttgttggtgttatccaaaaagataagaattta 14690991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 16436977 - 16436906
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    |||| |||| |||| |||| || || ||||||||||||||| ||||||||||||||  |||||| |||||||    
T  16436977 ataaaaatgttattatgttcgtatttttaaaaaagataagaatttatattatattttctatattattgatgt 16436906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 28133542 - 28133479
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgt 232  Q
    ||||||||||||||| ||||| |||| ||| |||  ||||||||| | ||||||||||||||||    
T  28133542 ttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 28133479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 1562641 - 1562679
Alignment:
Q  204 aaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  1562641 aaaaatataaaactttatattatatttgttatattgttg 1562679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 29729699 - 29729665
Alignment:
Q  200 attaaaaaagataagactttatattatatttgtta 234  Q
    |||||||||||||||| ||||||||||||||||||    
T  29729699 attaaaaaagataagaatttatattatatttgtta 29729665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 33803948 - 33803894
Alignment:
Q  174 tataagaatgctattttgtttgtgttatt-aaaaaagataagactttatattata 227  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||| |||||||||||    
T  33803948 tataagaatgctatattgttggtgtcattaaaaaaagataagaatttatattata 33803894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 3533244 - 3533301
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgt 246  Q
    ||||| |||||||||||||| ||||||  | ||||||||||| ||||||| |||||||    
T  3533244 ttgttggtgttattaaaaaaaataagaaatcatattatattttttatattattgatgt 3533301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 4578044 - 4578007
Alignment:
Q  204 aaaaagataagactttatattatatttgttatattgtt 241  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  4578044 aaaaagataagaatttatattatatttgctatattgtt 4578007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 7980524 - 7980573
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| || |||||||||||||||||| ||| ||||||||||||| ||||    
T  7980524 ttgttggttttattaaaaaagataagaatttttattatatttgttttatt 7980573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 22793744 - 22793683
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttata 236  Q
    |||| |||| ||| ||||| |||||||| |||||||||||| ||| |||||||||| |||||    
T  22793744 ataataatgttatattgttggtgttatttaaaaagataagaatttttattatatttattata 22793683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 28219464 - 28219525
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgt 232  Q
    ||||||||||||||| ||||| ||||||   |||  ||||||||||| ||||||||||||||||    
T  28219464 ttgactataagaatgttatttagtttgtc--attgcaaaagataagaatttatattatatttgt 28219525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 32570413 - 32570377
Alignment:
Q  202 taaaaaagataagactttatattatatttgttatatt 238  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  32570413 taaaaaagataagaatttatattatatttgctatatt 32570377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 38470996 - 38471069
Alignment:
Q  171 gactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgat 244  Q
    |||||||| |||||||||||||| || |||||||||||||||| | |||| ||| |||||||||||||||||||    
T  38470996 gactataaaaatgctattttgttggtcttattaaaaaagataaaaatttacattgtatttgttatattgttgat 38471069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 10427348 - 10427411
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||||||||||||| |||| ||| ||||||||||||  |||||||||||||||||||||    
T  10427348 ataagaatgctattttgttggtgtcatttaaaaagataagaacttatattatatttgttatatt 10427411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 35632987 - 35633045
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    |||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  35632987 taagaatgttattttgttggtgttattaaaaaatataagaatttatattatatttgtta 35633045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 31239073 - 31239162
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 265  Q
    ||||||||||||||| || || | ||| |||||||||||| |||||||||||||||||||||| ||||| |  ||||||  |||||||||    
T  31239073 taagaatgctattttattggtatcatttaaaaagataagaatttatattatatttgttatattcttgatatccttgaaaaagataagtat 31239162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 52675318 - 52675384
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||||||||||| || || |||||||| |||||||||||| ||| ||| ||||||||||||||||||    
T  52675318 taagaatgctatattattggtgttattgaaaaagataagaatttttatcatatttgttatattgttg 52675384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 10448210 - 10448137
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaa-gataagactttatattatatttgttatattgtt 241  Q
    |||| |||||||||| |||||||||  ||||||||||||| ||||||| |||||| |||||||||| |||||||    
T  10448210 ttgaatataagaatgatattttgttgatgttattaaaaaaagataagaatttatactatatttgttttattgtt 10448137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 33129438 - 33129482
Alignment:
Q  190 tgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||    
T  33129438 tgtttgtgttattaaaaaagatgagaatttatattatatttgtta 33129482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 10427493 - 10427548
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    |||||||||||||||||||  ||| ||||||||| |||||| ||||||||||||||    
T  10427493 ataagaatgctattttgttgatgtcattaaaaaaaataagaatttatattatattt 10427548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 12294450 - 12294518
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| || |||||| ||||||||| |||| |||  ||||||||||| ||||||||||||||||||||||    
T  12294450 ttgaccatcagaatgttattttgtt-gtgtcattttaaaagataagaatttatattatatttgttatatt 12294518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 44717407 - 44717358
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| ||||||||||||||||||||| ||| |||| |||||||||||||    
T  44717407 ttgttggtgttattaaaaaagataagaatttttattttatttgttatatt 44717358  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 35112426 - 35112490
Alignment:
Q  201 ttaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaacggataagtat 265  Q
    ||||||||||||||| ||||||||||||||| |||||| ||  |||| ||||||  |||||||||    
T  35112426 ttaaaaaagataagaatttatattatatttgctatattattagtgttattgaaaaagataagtat 35112490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 42825193 - 42825257
Alignment:
Q  177 aagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgtt 241  Q
    ||||||| ||| |||||||| |||||||||||||||| | ||||||||||| ||| |||| ||||    
T  42825193 aagaatgttatattgtttgtattattaaaaaagataataatttatattataattgctataatgtt 42825257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 43019550 - 43019494
Alignment:
Q  185 tattttgtttgtgttatt-aaaaaagataagactttatattatatttgttatattgt 240  Q
    ||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||    
T  43019550 tattttgttggtgtcattcaaaaaagataagaatttatattatatttgttgtattgt 43019494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 2665694 - 2665737
Alignment:
Q  204 aaaaagataagactttatattatatttgttatattgttgatgtt 247  Q
    ||||| |||||| || ||||||||||||||||||||||||||||    
T  2665694 aaaaaaataagaattaatattatatttgttatattgttgatgtt 2665737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 4790238 - 4790297
Alignment:
Q  172 actataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttg 231  Q
    ||||||||||||||||| |||| |||||| ||||||| |||| | ||||||||| |||||    
T  4790238 actataagaatgctattatgttggtgttaataaaaaatataaaaatttatattaaatttg 4790297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 11067151 - 11067088
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||| |||| ||| ||||| ||||||||||||||||||||| ||| | |||||||| |||||||    
T  11067151 ataataatgttatattgttggtgttattaaaaaagataagaatttttgttatattttttatatt 11067088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 16095761 - 16095839
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||| |||||||| |||||| || ||||| ||||||||||| ||| | |||||||||||||||| ||| |||| ||||||    
T  16095761 ataataatgctatattgttt-tgatattataaaagataagaatttttgttatatttgttatattattgttgttattgaaa 16095839  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 21966267 - 21966314
Alignment:
Q  195 gtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    |||| ||| |||||||||||| |||||||||||||||||| |||||||    
T  21966267 gtgtcattcaaaaagataagaatttatattatatttgttacattgttg 21966314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 33218406 - 33218457
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaaaaaagataagactttatattat 226  Q
    |||||||||||||||| || |||| ||| |||||||||||| ||||||||||    
T  33218406 ataagaatgctattttattggtgtcattcaaaaagataagaatttatattat 33218457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 38340135 - 38340178
Alignment:
Q  195 gtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||    
T  38340135 gtgttattaaaaaagataagaatttttattacatttgttatatt 38340178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 40780827 - 40780873
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttata 236  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  40780827 ttgttggtgttattaaaaaagataagaatttata-tatatttgttata 40780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 2653377 - 2653415
Alignment:
Q  205 aaaagataagactttatattatatttgttatattgttga 243  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  2653377 aaaatataagaatttatattatatttgttatattgttga 2653415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 41954440 - 41954383
Alignment:
Q  171 gactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatat 228  Q
    |||||||| | || ||||||||| |||||||| |||| ||||||| ||||||||||||    
T  41954440 gactataaaagtgttattttgttggtgttattcaaaaggataagattttatattatat 41954383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 4968759 - 4968695
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||| |||| ||| ||||| |||||||||| | |||||||| ||| | ||||||||||||||||    
T  4968759 tataataatgttatattgttggtgttattaagatagataagaatttttgttatatttgttatatt 4968695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 10428108 - 10428040
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    ||||||||||||||  ||||||||| |||| ||| ||||||||||   |||  ||||||||||||||||    
T  10428108 ttgactataagaatattattttgttggtgtcattcaaaaagataatttttttaattatatttgttatat 10428040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 10428315 - 10428263
Alignment:
Q  176 taagaatgctattttgtttgtgttattaaaaaagataagactttatattatat 228  Q
    |||||||||||| ||||| ||||| || |||||||||||| ||| ||||||||    
T  10428315 taagaatgctatattgttggtgttcttgaaaaagataagaatttttattatat 10428263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 29522572 - 29522536
Alignment:
Q  218 ttatattatatttgttatattgttgatgttgttgaaa 254  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  29522572 ttatattatatttgttatattgttaatgttattgaaa 29522536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 36564079 - 36564131
Alignment:
Q  178 agaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    |||||| |||||||||  ||| ||||||||| |||||| ||||||||||||||    
T  36564079 agaatgttattttgttgatgtcattaaaaaaaataagaatttatattatattt 36564131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 38190412 - 38190348
Alignment:
Q  175 ataagaatgctattttgtttgtgttattaa-aaaagataagactttatattatatttgttatatt 238  Q
    |||| |||||||| ||||| |||||||||| |||| | |||| ||||||||||||||| ||||||    
T  38190412 ataaaaatgctatattgttggtgttattaaaaaaaaaaaagattttatattatatttgctatatt 38190348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 36815 - 36868
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 242  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  36815 ttgttggtgttattaaaaaagataagaatttttattatatttgttatattgttg 36868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 65527 - 65595
Alignment:
Q  170 tgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    ||||||||| |||  ||||||||| || | ||| |||||||||||| ||||||||||||||||||||||    
T  65527 tgactataaaaatattattttgttggtatcattcaaaaagataagaatttatattatatttgttatatt 65595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 20909 - 20848
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatattt 230  Q
    ||||||||||||||| ||||| |||| ||| |||  ||||||||||| ||||||||||||||    
T  20909 ttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatattt 20848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 19962 - 20023
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgt 232  Q
    ||||||||||||||| ||||| ||||||   |||  ||||||||||| ||||||||||||||||    
T  19962 ttgactataagaatgttatttagtttgtc--attgcaaaagataagaatttatattatatttgt 20023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 11677 - 11742
Alignment:
Q  173 ctataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatatt 238  Q
    |||||| |||| ||| ||||| ||||||||||||||||||||| ||| | |||||||| |||||||    
T  11677 ctataataatgttatattgttggtgttattaaaaaagataagaatttttgttatatttattatatt 11742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 11578 - 11515
Alignment:
Q  169 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgt 232  Q
    ||||||||||||||| ||||| |||| ||| |||  ||||||||| | ||||||||||||||||    
T  11578 ttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 11515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 5843 - 5897
Alignment:
Q  174 tataagaatgctattttgtttgtgttattaaaaaagataagactttatattatat 228  Q
    ||||||||| |||| || ||||||| ||| |||||||||||| ||||||||||||    
T  5843 tataagaatactatattttttgtgtgattcaaaaagataagaatttatattatat 5897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 226449 - 226395
Alignment:
Q  180 aatgctattttgtttgtgttattaaaaaagataagactttatattatatttgtta 234  Q
    |||| ||| ||||| |||||||||||||| |||||| ||| ||||||||||||||    
T  226449 aatgttatattgttcgtgttattaaaaaaaataagaatttttattatatttgtta 226395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1777 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1777
Description:

Target: scaffold1777; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 600 - 648
Alignment:
Q  189 ttgtttgtgttattaaaaaagataagactttatattatatttgttatat 237  Q
    ||||| || ||||| ||||| |||||| |||||||||||||||||||||    
T  600 ttgttggtattattgaaaaatataagaatttatattatatttgttatat 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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