View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_52 (Length: 264)
Name: NF7665_high_52
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 45310969 - 45311226
Alignment:
| Q |
1 |
tatgtggtttaaacttttttagtatagtg----tatctactatgaaaatgtctttctctaatgacgcgtgacgtaacagaatttcaaacatttgttttat |
96 |
Q |
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| T |
45310969 |
tatgttgtttaaacttttttagtatagtgagtgtatctactatgaaaatgtctttctctaatgacgcgtgacgtaacagaatttcaaacatttgttttat |
45311068 |
T |
|
| Q |
97 |
gtttgcatttgtattaattaattgctattttgtctttatggaataatacataacaaaacttatgnnnnnnnnnnnnnatggacagctcccgaacgttgtg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45311069 |
gtttgcatttgtattaattaattgctattttgtctttatggaataatacataacaaaacttatgtttttttttttttatggacagctcccgaacgttgtg |
45311168 |
T |
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| Q |
197 |
gggttaacatttggaatagttcagatcacactctatgcaatgtacagaaacaccaaac |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45311169 |
gggttaacatttggaatagttcagatcacactctatgcaatgtacagaaacagcaaac |
45311226 |
T |
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