View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_59 (Length: 242)
Name: NF7665_high_59
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_59 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 14395099 - 14394938
Alignment:
| Q |
1 |
actttagattatttaacatgtgtcataaggatacaagttaacatttctattgtattatgatgcttcaaaccattagtattaatttatatatttactacta |
100 |
Q |
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| T |
14395099 |
actttaaattctttaacatgtgtcataaggatacaagttaacatttctcttgtattatgatgcttcaaaccagtagtattaatttatatatttactacta |
14395000 |
T |
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| Q |
101 |
aaaatgaattattaaatgatgcttc-aaacccaaaaccttttttattcaaattgaccctcaa |
161 |
Q |
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| T |
14394999 |
aaaatgaattattaaatgatgcttcaaaacccaaaatcttttctattcaaattgaccctcaa |
14394938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 14394780 - 14394719
Alignment:
| Q |
164 |
agtacattgcttgaaggttgagttttaaatgtcattctcaggttaaaatacatgacgtgatg |
225 |
Q |
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| T |
14394780 |
agtacattgcttgaaggttgagttttaaatgtcattctcaggtgaaaatacatgacgtgatg |
14394719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 14395268 - 14395229
Alignment:
| Q |
74 |
tagtattaatttatatatttactactaaaaatgaattatt |
113 |
Q |
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| T |
14395268 |
tagtattaatttagatatttactactaaaattgaattatt |
14395229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 21328005 - 21328043
Alignment:
| Q |
13 |
ttaacatgtgtcataaggatacaagttaacatttctatt |
51 |
Q |
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| T |
21328005 |
ttaacatgtgtcgtaaggacacaagttaacatttctatt |
21328043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28703672 - 28703627
Alignment:
| Q |
1 |
actttagattatttaacatgtgtcataaggatacaagttaacattt |
46 |
Q |
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| T |
28703672 |
actttagattctttaacatatgtcttaaggacacaagttaacattt |
28703627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 2617108 - 2617148
Alignment:
| Q |
3 |
tttagattatttaacatgtgtcataaggatacaagttaaca |
43 |
Q |
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| T |
2617108 |
tttagattttttaacatgtgccataaggacacaagttaaca |
2617148 |
T |
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