View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_60 (Length: 238)
Name: NF7665_high_60
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27685695 - 27685919
Alignment:
| Q |
1 |
cactcaaattttttaaaaaatgtttaaccttccattaatcaacttcannnnnnn-aatcatgatcatatcttaatcttacataaaaagctgttataactc |
99 |
Q |
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| T |
27685695 |
cactcaaatttttttaaaaatgtttaaccttccattaatcaacttcattttttttaatcatgatcatatcttaatcttacataaaaagctgttataactc |
27685794 |
T |
|
| Q |
100 |
ctgcagtgtagccaggatgaagcttaatcgaagcgccaaagtatcccgatcgaaatggacgatttgacttgaacccacttcctattaatcagaagnnnnn |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
27685795 |
ctgcagtgtagccaggatgaagcttaatcgaagcgccaaagtatcccgatcgaaatggacgattcgacttgaatccacttcctattaatcagaagaaaaa |
27685894 |
T |
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| Q |
200 |
nnntgtagtgttacacgtcaatgat |
224 |
Q |
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|||||||||||| ||||||||| |
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| T |
27685895 |
aaatgtagtgttacatgtcaatgat |
27685919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 41268815 - 41268734
Alignment:
| Q |
73 |
atcttacataaaaagctgttataactcctgcagtgtagccaggatgaagcttaatcgaagcgccaaagtatcccgatcgaaa |
154 |
Q |
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|||||||||| |||| |||||||||||||||||| || ||||| ||||||||||| ||||| |||||||| || |||||||| |
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| T |
41268815 |
atcttacatagaaagatgttataactcctgcagtataaccaggttgaagcttaatggaagcaccaaagtagccagatcgaaa |
41268734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 21085407 - 21085459
Alignment:
| Q |
93 |
ataactcctgcagtgtagccaggatgaagcttaatcgaagcgccaaagtatcc |
145 |
Q |
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|||||||| ||||| |||||||||||||||||||| | ||| ||||||||||| |
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| T |
21085407 |
ataactccagcagtatagccaggatgaagcttaattgcagcaccaaagtatcc |
21085459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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