View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_65 (Length: 225)
Name: NF7665_high_65
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 9432044 - 9431863
Alignment:
| Q |
35 |
tttccgttttattaaagagatttgtagcatcccgaagacgtatgcataatttttgtagttgagcgtatgagtagaacattgaatgagagatcgagaagca |
134 |
Q |
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| T |
9432044 |
tttccgttttattaaagagatttgtagcatcccgaagacataggcataatttttgtagttgagcgtatgagtagaacattgaatgagagatcgagaagca |
9431945 |
T |
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| Q |
135 |
tgcatgtgcacacaggcttaccaaagtggttctgtacagaagcagttaacacattagcttacttaatcaactgatgtccatc |
216 |
Q |
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| T |
9431944 |
tgcatgtgcacgcaggcttaccaaagtggttctgtacggaagcagttaacacattagcttacttaatcaactgaggtccatc |
9431863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 6691139 - 6691267
Alignment:
| Q |
88 |
tgtagttgagcgtatgagtagaacattgaatgagagatcgagaagcatgcatgtgcacacaggcttaccaaagtggttctgtacagaagcagttaacaca |
187 |
Q |
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| T |
6691139 |
tgtagctgagcgtatgaatagaacattgactgagagagccagaagcttgcgtgtgcgttcaggcttaccaaagaacttctgggcagaagcagtcaacaca |
6691238 |
T |
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| Q |
188 |
ttagcttacttaatcaactgatgtccatc |
216 |
Q |
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| T |
6691239 |
tcagattacttaatcaaccgaggtccatc |
6691267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 797687 - 797559
Alignment:
| Q |
88 |
tgtagttgagcgtatgagtagaacattgaatgagagatcgagaagcatgcatgtgcacacaggcttaccaaagtggttctgtacagaagcagttaacaca |
187 |
Q |
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| T |
797687 |
tgtagctgagcgtatgaatagaacattgactgagagagccagaagcttgcgtgtgcagtcaggcttaccaaagaaattctgggcagaagcagtcaacaca |
797588 |
T |
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| Q |
188 |
ttagcttacttaatcaactgatgtccatc |
216 |
Q |
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| T |
797587 |
tcagcttacttaatcaaccgaggtccatc |
797559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 8272140 - 8272268
Alignment:
| Q |
88 |
tgtagttgagcgtatgagtagaacattgaatgagagatcgagaagcatgcatgtgcacacaggcttaccaaagtggttctgtacagaagcagttaacaca |
187 |
Q |
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| T |
8272140 |
tgtagttgagcgtatgaatagaacattgactgagagagccagaagcttgcgtgtgcagtcaggcttaccaaagaacttctgggcaaaagcagtcaacaca |
8272239 |
T |
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| Q |
188 |
ttagcttacttaatcaactgatgtccatc |
216 |
Q |
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| T |
8272240 |
tcagcttacttaatcaaccgaggtccatc |
8272268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 19943084 - 19943212
Alignment:
| Q |
88 |
tgtagttgagcgtatgagtagaacattgaatgagagatcgagaagcatgcatgtgcacacaggcttaccaaagtggttctgtacagaagcagttaacaca |
187 |
Q |
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| T |
19943084 |
tgtagctgagcgtatgaatagaacattgactgagagagccagaagcttgcgtgtgcagtcaggcttaccaaagaacttctgggcagaagcagtcaacaca |
19943183 |
T |
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| Q |
188 |
ttagcttacttaatcaactgatgtccatc |
216 |
Q |
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| T |
19943184 |
tcagcttacttaatcaaccgaggtccatc |
19943212 |
T |
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