View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_high_7 (Length: 616)
Name: NF7665_high_7
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 289 - 598
Target Start/End: Complemental strand, 22323767 - 22323457
Alignment:
| Q |
289 |
gtattcattctacttgctatctcacaataaactaccagctacaccattttaacgggtatatctttacattcagcccaccgtaatagataaaaacattcaa |
388 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22323767 |
gtattcattctacttgctatctcacaataatctaccagctacaccattttaacgggtatatctttacattcagcccaccgtaatagataaaaacattcaa |
22323668 |
T |
|
| Q |
389 |
tcaattataaataaggaaaatgctaacgagatatctgagacactctttaaataaatg-nnnnnnnnncacccacaataaaagttataacaatattgaaca |
487 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22323667 |
tcaattataaataaggaaaatgttaacgagatatctgagacactctttaaataaatgttttttttttcacccacaataaaagttataacaatattgaaca |
22323568 |
T |
|
| Q |
488 |
atattaaggaaggaggtaggtggtcgtattaaggaagggggtagaaatgcgtctaggtggtggaggatgatatgcaacgtaagggaagggagcggatagg |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22323567 |
atattaaggaaggaggtaggtggtcgtattaaggaagggggtagaaatgcgtctaggtggtggaggatgatatgcaacgtaagggaagggagcggatcgg |
22323468 |
T |
|
| Q |
588 |
cagtagtaagt |
598 |
Q |
| |
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||||||||||| |
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| T |
22323467 |
cagtagtaagt |
22323457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 22324056 - 22323807
Alignment:
| Q |
2 |
aatcgaataaaaccacaatgagacacaactaaaaaagtgttgcattaagaagaagaa---cgacaaaacaatgtctcaatcaaacgacgaaattatgaaa |
98 |
Q |
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||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22324056 |
aatcgaacaaaaccacaatgagacacaac-aaaaaagtgctgcattaagaagaagaagaacgacaaaacaatgtctcaatcaaacgacgaaattatgaaa |
22323958 |
T |
|
| Q |
99 |
gaaaaacaatcacttatttaaagaaaaaggaaggaataatgatttagatgagcaattttgaatgaaaaattagtcttaaatcatctttctcacgtggatg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22323957 |
gaaaaacaatcacttatttaaagaaaaaggaaggaatgatgatttagatgagcaattttgaatgaaaaattagtcttaaatcatctttctcacgtggatg |
22323858 |
T |
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| Q |
199 |
aagaagaaaagatgaaaagaaaacagacgaggggttaggttagagagagga |
249 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22323857 |
aagtagaaaagatgaaaagaaaacagacgaggggttaggttagagagagga |
22323807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 500 - 579
Target Start/End: Original strand, 643954 - 644033
Alignment:
| Q |
500 |
gaggtaggtggtcgtattaaggaagggggtagaaatgcgtctaggtggtggaggatgatatgcaacgtaagggaagggag |
579 |
Q |
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||||| || ||| |||||| |||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||| |
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| T |
643954 |
gaggtgggcggttgtattagggaaggtggtagaaatgcttcaaggtggtggaggatgatatgtaatgtaagggaagggag |
644033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 579
Target Start/End: Complemental strand, 22359809 - 22359750
Alignment:
| Q |
520 |
ggaagggggtagaaatgcgtctaggtggtggaggatgatatgcaacgtaagggaagggag |
579 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||| || || || ||||||||||| |
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| T |
22359809 |
ggaaggaggtagaaatgtttctaggtggtggaggatgatttgtaatgtgagggaagggag |
22359750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 577
Target Start/End: Original strand, 38650225 - 38650303
Alignment:
| Q |
499 |
ggaggtaggtggtcgtattaaggaagggggtagaaatgcgtctaggtggtggaggatgatatgcaacgtaagggaaggg |
577 |
Q |
| |
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|||||| || ||||| ||| ||||||| || ||| ||| |||| | |||||||||||||||||||| || ||||||||| |
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| T |
38650225 |
ggaggtgggaggtcgaatttaggaaggagggagagatgtgtctggttggtggaggatgatatgcaatgtgagggaaggg |
38650303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 500 - 579
Target Start/End: Original strand, 5194490 - 5194569
Alignment:
| Q |
500 |
gaggtaggtggtcgtattaaggaagggggtagaaatgcgtctaggtggtggaggatgatatgcaacgtaagggaagggag |
579 |
Q |
| |
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|||||||||||| | |||| |||||| ||||||||||| ||||||||||| ||| |||||||||| || ||||||||||| |
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| T |
5194490 |
gaggtaggtggttgcattatggaaggaggtagaaatgcttctaggtggtgaagggtgatatgcaatgtgagggaagggag |
5194569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 580
Target Start/End: Original strand, 15139623 - 15139704
Alignment:
| Q |
499 |
ggaggtaggtggtcgtattaaggaagggggtagaaatgcgtctaggtggtggaggatgatatgcaacgtaagggaagggagc |
580 |
Q |
| |
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||||||||||||||||||| || |||| | | || |||| ||||||||||||| ||||||||| || || |||||||||||| |
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| T |
15139623 |
ggaggtaggtggtcgtattgagaaaggagatcgatatgcatctaggtggtggaagatgatatgtaatgtgagggaagggagc |
15139704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 9195611 - 9195569
Alignment:
| Q |
516 |
ttaaggaagggggtagaaatgcgtctaggtggtggaggatgat |
558 |
Q |
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|||||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
9195611 |
ttaaggaagggggtagaagtgcttctgggtggtggaggatgat |
9195569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 19668624 - 19668548
Alignment:
| Q |
500 |
gaggtaggtggtcgtattaaggaagggggtagaaatgcgtctaggtggtggaggatgatatgcaacgtaagggaagg |
576 |
Q |
| |
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||||| ||||| || ||||||| ||| | |||| |||| |||||||||||| |||||||||| || || |||||||| |
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| T |
19668624 |
gaggttggtggccgaattaaggtaggagatagacatgcttctaggtggtgggggatgatatgtaatgtgagggaagg |
19668548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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