View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7665_low_10 (Length: 592)

Name: NF7665_low_10
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7665_low_10
NF7665_low_10
[»] chr2 (21 HSPs)
chr2 (9-574)||(44615393-44615958)
chr2 (352-569)||(44624774-44624988)
chr2 (252-575)||(39153045-39153356)
chr2 (261-561)||(39216657-39216945)
chr2 (364-566)||(39205730-39205929)
chr2 (376-569)||(39196510-39196700)
chr2 (378-563)||(39371115-39371297)
chr2 (376-562)||(39387494-39387677)
chr2 (373-574)||(39138633-39138828)
chr2 (278-562)||(39396563-39396835)
chr2 (9-81)||(44748520-44748592)
chr2 (450-569)||(39421257-39421373)
chr2 (373-482)||(39472761-39472870)
chr2 (402-569)||(44895133-44895297)
chr2 (295-506)||(39412957-39413159)
chr2 (378-569)||(39380496-39380684)
chr2 (376-557)||(39223715-39223893)
chr2 (229-283)||(44749549-44749603)
chr2 (493-564)||(39099584-39099652)
chr2 (426-479)||(39188804-39188857)
chr2 (9-46)||(44625131-44625168)
[»] chr8 (4 HSPs)
chr8 (262-519)||(44730154-44730402)
chr8 (262-518)||(44949787-44950037)
chr8 (373-569)||(45342957-45343150)
chr8 (10-82)||(44947455-44947527)
[»] chr5 (3 HSPs)
chr5 (352-562)||(17060645-17060852)
chr5 (376-569)||(33562281-33562471)
chr5 (102-138)||(17061055-17061091)
[»] scaffold0283 (2 HSPs)
scaffold0283 (262-518)||(5767-6017)
scaffold0283 (10-82)||(3434-3506)
[»] chr7 (1 HSPs)
chr7 (373-564)||(19808900-19809085)
[»] chr6 (1 HSPs)
chr6 (448-569)||(16114359-16114477)


Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 9 - 574
Target Start/End: Complemental strand, 44615958 - 44615393
Alignment:
Q  9 caacaatatctgcaaggtgtaagaaaaattcacatcatttaaacttctataatgtaggctaaataagttcttgtgttaacnnnnnnnctaaacaaatttt 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||     
T  44615958 caacaaaatctgcaaggtgtaagaaaaattcacatcatttaaacttctataatgtaggctaaataagttcttgtgttaacaaaaaa-ctaaacaaatttc 44615860  T
Q  109 aagtctatttcattttccaaacattaacacacaaaacatcaattttataccaagttacctacatctagtatcttattaatcttacaagacatgattatat 208  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615859 aagtctatttcattttccaaacattaacacacaaaatatcaattttataccaagttacctacatctagtatcttattaatcttacaagacatgattatat 44615760  T
Q  209 atatgatgtaacataagcatagagacaataagagaaatattggtgaccga-----ctaaagaatttctaaatcaacatacgagagactttatttgcaaaa 303  Q
        ||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||||||||||    
T  44615759 ----gatgtaacataagcatagagacaataagagaaatattggtgaccgaaccgactaaagaatttctaaatcaacataccagagactttatttgcaaaa 44615664  T
Q  304 cccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaacca 403  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44615663 cccagtgtcctacacagcttcacagctatcttgtattcagcagcagacgcaacataagcaaaaatcttgaagacttcatcttcatcaaagtaattaacca 44615564  T
Q  404 atccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgc 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615563 atccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgc 44615464  T
Q  504 ttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagatccagc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615463 ttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagatccagc 44615393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 352 - 569
Target Start/End: Complemental strand, 44624988 - 44624774
Alignment:
Q  352 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 451  Q
    ||||||||  |||||| |||  ||||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||| |||    
T  44624988 gcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataat 44624889  T
Q  452 tttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcag 551  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||   ||||||||||||||||| |||||||    
T  44624888 tttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtt---taatatttggtgagattgtcatcag 44624792  T
Q  552 ttgttctagcagatagat 569  Q
    || |||||||||||||||    
T  44624791 tttttctagcagatagat 44624774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 252 - 575
Target Start/End: Complemental strand, 39153356 - 39153045
Alignment:
Q  252 tgaccgactaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagac 351  Q
    |||| ||| |||| || ||||||| ||||||| ||| ||||||||||||||||||||||||| | | || | ||||||  |||||| || ||||          
T  39153356 tgactgaccaaagcatgtctaaattaacataccagaaactttatttgcaaaacccagggtccgaaatagttccacagcagtcttgtgttgagca------ 39153263  T
Q  352 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 451  Q
       ||| | ||||||| ||  ||||||||||||| ||| ||  || |||||||||| |||||||| |||| || |||||| |||||| || |||||||||    
T  39153262 ---acaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaat 39153166  T
Q  452 tttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcag 551  Q
    |||| ||||||||||| || ||||||||||| |||   || || ||||| ||||| ||||||||||||| ||   |||| || ||||||||| |||||||    
T  39153165 tttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtt---taatcttcggtgagattctcatcag 39153069  T
Q  552 ttgttctagcagatagatccagct 575  Q
    ||||||||||||| |||| |||||    
T  39153068 ttgttctagcagaaagatgcagct 39153045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 261 - 561
Target Start/End: Complemental strand, 39216945 - 39216657
Alignment:
Q  261 aaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaa 360  Q
    |||| |||||||||| ||||||| ||| ||||||||||||||||||||||||  | |||| |  | |||||||||||        || || ||||||||     
T  39216945 aaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgt--------gctga-gcaacagat 39216855  T
Q  361 gcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtat 460  Q
    ||||||| ||  || |||||||||||| ||||  || |||||||||| ||||| || |||| ||  ||||| || ||| || ||||||||||||  ||||    
T  39216854 gcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtat 39216755  T
Q  461 tttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctag 560  Q
    ||||  ||||||||| |||||| ||| | ||||||||||| ||||| ||||||||||||| |||||||  |   ||||||||| ||||||||||||||||    
T  39216754 tttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatga---ggtgagattttcatcagttgttctag 39216658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 566
Target Start/End: Original strand, 39205730 - 39205929
Alignment:
Q  364 aaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatttt 463  Q
    ||||||| ||| |||||||||| ||||||  ||| || ||||   |||||||| |||| || |||||| |||||| || ||| ||||||||| |||||||    
T  39205730 aaaatctcgaaaacttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtatttt 39205829  T
Q  464 ctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcag 563  Q
    ||||||| ||||||||||| ||| | ||||||||||| ||||  ||||| ||||||| || |||||    |||||||||| ||||||||||||| |||||    
T  39205830 ctttcatcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataa---ctggtgagattctcatcagttgttcaagcag 39205926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 376 - 569
Target Start/End: Original strand, 39196510 - 39196700
Alignment:
Q  376 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 475  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||||||||||| ||||| || ||||||||||    
T  39196510 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttag 39196609  T
Q  476 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 569  Q
    ||||||| ||| | ||||||||||| ||||| | ||| ||||||| ||   |||||| |||||||||| ||||||||||||| |||||||||||    
T  39196610 ctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtt---taatatctggtgagattctcatcagttgttccagcagatagat 39196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 378 - 563
Target Start/End: Complemental strand, 39371297 - 39371115
Alignment:
Q  378 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagct 477  Q
    |||||||||||||||  || |||||||||| ||| | || |||| ||||||||| |||||| || |||||| |||||   |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  478 ttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcag 563  Q
    ||||  |||   ||||||||||| |||||||||||||||||||  |    |||||||||||||||| |||| ||||||||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctcttacacaaggct---caatatttggtgagattttcataagttgttctagcag 39371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 376 - 562
Target Start/End: Original strand, 39387494 - 39387677
Alignment:
Q  376 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 475  Q
    ||||||||||| ||||| |||| || ||  || ||||| || |||| ||  ||||| |||||| |  ||||||||||||| |||||||||||||||||||    
T  39387494 acttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttag 39387593  T
Q  476 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagca 562  Q
    |||| || |||| |||||||||||| ||||| | | ||||||||| ||    ||| ||||||||| || ||||||||||||||||||    
T  39387594 cttttaaatcacgcgctagcttcaatgcttctttttttacacaagttt---caatttttggtgaggttctcatcagttgttctagca 39387677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 373 - 574
Target Start/End: Complemental strand, 39138828 - 39138633
Alignment:
Q  373 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 472  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || ||||||| |||||| || ||| || ||| ||||||||| |||||   ||||||||    
T  39138828 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgt 39138732  T
Q  473 tagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagatcca 572  Q
    |||||||||  | |   ||||||||||| ||||| |||||||||  || ||   |||| || ||||||||| |||||||||||||||||||| |||| ||    
T  39138731 tagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtt---taatcttcggtgagattctcatcagttgttctagcagaaagatgca 39138635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 562
Target Start/End: Original strand, 39396563 - 39396835
Alignment:
Q  278 acatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagac 377  Q
    |||||| ||| ||||||||||||||||||||||||  | |||||| || |||| ||||||        || || ||||| || ||||||| ||  || ||    
T  39396563 acataccagaaactttatttgcaaaacccagggtctcaaacagctccatagctgtcttgt--------gctga-gcaaccgatgcaaaaagctccaaaac 39396653  T
Q  378 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagct 477  Q
    |||||||||||| ||  || ||| |||||| ||||| || |||| ||| | ||| |||||| || ||||||||||||| ||||||||| | |||| ||||    
T  39396654 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttctctaatgtaagct 39396753  T
Q  478 ttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagca 562  Q
     |||| |||   ||||||||||  ||||| ||||||||||||| |    ||||| ||||||||||| ||||||||| ||||||||    
T  39396754 ctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggt---ctaatagttggtgagattctcatcagttcttctagca 39396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 44748592 - 44748520
Alignment:
Q  9 caacaatatctgcaaggtgtaagaaaaattcacatcatttaaacttctataatgtaggctaaataagttcttg 81  Q
    |||||| |||||||||||||||||||||||||| ||||  ||||||||| ||||||||||| |||||||||||    
T  44748592 caacaaaatctgcaaggtgtaagaaaaattcacttcataaaaacttctagaatgtaggctacataagttcttg 44748520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 569
Target Start/End: Original strand, 39421257 - 39421373
Alignment:
Q  450 attttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatc 549  Q
    |||||| |||||||||| ||| ||||||||||| |||   || |||||||| ||||| ||| ||||||||| ||   |||||| |||||||||| |||||    
T  39421257 attttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttt---taatatgtggtgagattttcatc 39421353  T
Q  550 agttgttctagcagatagat 569  Q
    ||||||||||||||| ||||    
T  39421354 agttgttctagcagaaagat 39421373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 373 - 482
Target Start/End: Original strand, 39472761 - 39472870
Alignment:
Q  373 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 472  Q
    ||||||||||||||||||||  || ||| |||| | ||||| || |||| || |||||| |||||| |  ||||||||||||| ||||||||||||||||    
T  39472761 aagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgt 39472860  T
Q  473 tagctttcaa 482  Q
    || |||||||    
T  39472861 taactttcaa 39472870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 402 - 569
Target Start/End: Original strand, 44895133 - 44895297
Alignment:
Q  402 caatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaac 501  Q
    |||||| ||||| || |||| || |||||| |||||| || ||||||||||||| |||||| |||| ||||||||||| || | |   |||||||||||     
T  44895133 caatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaatttatgtgctagcttcaat 44895232  T
Q  502 gcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 569  Q
    ||||  |||||||||| || ||||||||   ||||||| |||  |||||||  |||||||||||||||    
T  44895233 gcttgttctcttacacgaggtttaataa---ttggtgacattcccatcagtgtttctagcagatagat 44895297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 295 - 506
Target Start/End: Original strand, 39412957 - 39413159
Alignment:
Q  295 tttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagacttcatcttcatcaaagt 394  Q
    ||||||||||||||||| | | |||||||| |||||||||||| || ||||         ||| | ||||||| ||  |||| |||||||||||| ||      
T  39412957 tttgcaaaacccagggttccaaacagcttcgcagctatcttgtgttgagca---------acaaatgcaaaaagctccaagatttcatcttcatccaaaa 39413047  T
Q  395 aattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctag 494  Q
    || ||||||||||  |||  || |||| ||| ||||| | |||| || ||||||| ||||||||||||||||||| |||||||||||| |||   |||||    
T  39413048 aagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtattttctttcaagttagctttcaaatcaagtgctag 39413147  T
Q  495 cttcaacgcttc 506  Q
    |||||| |||||    
T  39413148 cttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 569
Target Start/End: Original strand, 39380496 - 39380684
Alignment:
Q  378 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagct 477  Q
    |||||||||||| ||  || ||| |||||| ||||| || |||| || ||||||||||||| || ||| ||||| ||| ||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  478 ttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 569  Q
    ||||| |||   |||||| |||  ||||| ||||||||||||  ||    |||||| ||||||| | |||||||||||||||||||| ||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatctt---caatattcggtgagactctcatcagttgttctagcagaaagat 39380684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 557
Target Start/End: Complemental strand, 39223893 - 39223715
Alignment:
Q  376 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 475  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||||| ||||| ||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  476 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttc 557  Q
    |||| || ||| | ||||||||||| ||||  |||||  |||||| ||    ||||| |||||||||| |||||||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggtt---caatatctggtgagattctcatcagttgttc 39223715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 44749549 - 44749603
Alignment:
Q  229 agagacaataagagaaatattggtgaccgactaaagaatttctaaatcaacatac 283  Q
    |||||||| | |||| ||| ||||||| |||||||||||||||||||||||||||    
T  44749549 agagacaaaaggagagatactggtgactgactaaagaatttctaaatcaacatac 44749603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 564
Target Start/End: Complemental strand, 39099652 - 39099584
Alignment:
Q  493 agcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 564  Q
    ||||||| |||||| ||||||||||||| ||| |||   | |||||||||| ||||||||||||| ||||||    
T  39099652 agcttcatcgcttcttctcttacacaaggtttgata---tgtggtgagattctcatcagttgttcgagcaga 39099584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 479
Target Start/End: Original strand, 39188804 - 39188857
Alignment:
Q  426 tagaaatccaagagcctccaaagaattttcggtattttctttcatgttagcttt 479  Q
    |||||| |||||| || ||||||||||| |  ||||||||||||||||||||||    
T  39188804 tagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 44625168 - 44625131
Alignment:
Q  9 caacaatatctgcaaggtgtaagaaaaattcacatcat 46  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  44625168 caacaaaatctgcaaggtgtaagaaaaattcacttcat 44625131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 262 - 519
Target Start/End: Complemental strand, 44730402 - 44730154
Alignment:
Q  262 aagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaag 361  Q
    |||||||||| ||||||| ||||||||||||||||  |||||  |||||||||| |||  ||| |||||||||||| |||| ||         ||||| |    
T  44730402 aagaatttcttaatcaacttacgagagactttattcacaaaatgcagggtcctaaacacattcgcagctatcttgtgttcaaca---------acagatg 44730312  T
Q  362 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 461  Q
    |  ||| ||   ||||||||||| ||||||||||| ||| |||||  |||||||  ||||||||||||||||| ||| ||||| |||||||||| |||||    
T  44730311 cgtaaagctcagagacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtatt 44730212  T
Q  462 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaa 519  Q
    |||||| ||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  44730211 ttcttttatgttagctttcaactcatgtgctagcttcaaagcttcatctcttacacaa 44730154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 262 - 518
Target Start/End: Original strand, 44949787 - 44950037
Alignment:
Q  262 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacag 358  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| |||| |||||||         ||||    
T  44949787 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagca---------acag 44949877  T
Q  359 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 458  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
T  44949878 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 44949977  T
Q  459 attttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacaca 518  Q
    ||||||||| || |||  ||||||||||   ||||||||||| ||||||||||| |||||    
T  44949978 attttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 44950037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 373 - 569
Target Start/End: Complemental strand, 45343150 - 45342957
Alignment:
Q  373 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 472  Q
    ||||||||||||| ||||||  || ||| |||| | | ||| || ||||||| |||||| |||||| | | ||| || ||||| |||||| |||||| ||    
T  45343150 aagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttttcagtatttcctttcacgt 45343051  T
Q  473 tagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 569  Q
    ||||||||||||||   |||||||| || ||||| ||||||||||||| ||||||| |   |||  ||||| |||||||||||||||| ||||||||    
T  45343050 tagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatact---tggcaagattctcatcagttgttctaggagatagat 45342957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 44947455 - 44947527
Alignment:
Q  10 aacaatatctgcaaggtgtaagaaaaattcacatcatttaaacttctataatgtaggctaaataagttcttgt 82  Q
    ||||| |||||||||||||||||||||||||| | ||  ||||||| | |||| |||||||||||||||||||    
T  44947455 aacaaaatctgcaaggtgtaagaaaaattcacttgatcaaaacttcaagaatgcaggctaaataagttcttgt 44947527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 352 - 562
Target Start/End: Complemental strand, 17060852 - 17060645
Alignment:
Q  352 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 451  Q
    |||||||| |||||||  |  ||||||||||||| |||||| ||| ||| |||||| |||| ||| || ||||| |||||||| ||| ||||||| ||||    
T  17060852 gcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaat 17060753  T
Q  452 tttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcag 551  Q
     ||| |||||| |||| ||||||||||||||||||   ||||||||||| ||||| ||| |||||||||||||   |||||||||||| |||||||||||    
T  17060752 attcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagattt---aatatttggtgacattatcatcag 17060656  T
Q  552 ttgttctagca 562  Q
    |||||||||||    
T  17060655 ttgttctagca 17060645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 569
Target Start/End: Complemental strand, 33562471 - 33562281
Alignment:
Q  376 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 475  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||| ||  ||| |||||||||||||||||||    
T  33562471 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattcagtattttctttcatgttag 33562372  T
Q  476 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 569  Q
    ||||||| ||| | ||||||||||| ||||| | ||| ||||||| ||    ||||| |||||||||| ||||||||||||| || ||||||||    
T  33562371 ctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtt---caatatctggtgagattctcatcagttgttccagaagatagat 33562281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 17061091 - 17061055
Alignment:
Q  102 aaattttaagtctatttcattttccaaacattaacac 138  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  17061091 aaattttgagtctatttcattttccaaaaattaacac 17061055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 262 - 518
Target Start/End: Original strand, 5767 - 6017
Alignment:
Q  262 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacag 358  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| |||| |||||||         ||||    
T  5767 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagca---------acag 5857  T
Q  359 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 458  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
T  5858 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 5957  T
Q  459 attttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacaca 518  Q
    ||||||||| || |||  ||||||||||   ||||||||||| ||||||||||| |||||    
T  5958 attttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 6017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 3434 - 3506
Alignment:
Q  10 aacaatatctgcaaggtgtaagaaaaattcacatcatttaaacttctataatgtaggctaaataagttcttgt 82  Q
    ||||| |||||||||||||||||||||||||| | ||  ||||||| | |||| |||||||||||||||||||    
T  3434 aacaaaatctgcaaggtgtaagaaaaattcacttgatcaaaacttcaagaatgcaggctaaataagttcttgt 3506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 373 - 564
Target Start/End: Complemental strand, 19809085 - 19808900
Alignment:
Q  373 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 472  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || |||| || |||||| |||||| || ||| ||||||||| ||| |||   ||||||    
T  19809085 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtacttt---tcatgt 19808989  T
Q  473 tagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 564  Q
    |||||||||| |||   ||||||||||| | ||| |||||||||| || ||   |||| || ||||||||| ||||||||||||||||||||    
T  19808988 tagctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtt---taatcttcggtgagattctcatcagttgttctagcaga 19808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 569
Target Start/End: Complemental strand, 16114477 - 16114359
Alignment:
Q  448 gaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatca 547  Q
    |||||||  ||||| ||| |||||| ||||||||| || | |||||||||||| ||||  |||||||||| || ||   ||||| ||||||| ||| |||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtt---taatagttggtgatattctca 16114381  T
Q  548 tcagttgttctagcagatagat 569  Q
    |||||| ||||| |||||||||    
T  16114380 tcagttcttctaacagatagat 16114359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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