View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_11 (Length: 565)
Name: NF7665_low_11
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 51844209 - 51844413
Alignment:
| Q |
11 |
ctgaaatgaaggtagccggtcaacgaatagaagatgttaaaaatagcnnnnnnntctgaatgaattcaatccaattgtaaatttaactataattagaatt |
110 |
Q |
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| T |
51844209 |
ctgaaatgaaggtagccggtcaacgaatagaagatgttaaaaatagcaaaaaaatctgaatgaattgaatccaattgtaaatttaactataattagaatt |
51844308 |
T |
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| Q |
111 |
aaaatccaatattggtaattctaaaagttgaagcctccatcaccaatctgttctcacacacgatgacaactttcatgtttccgtttgtggctacccaatt |
210 |
Q |
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| T |
51844309 |
aaaatccaatattggtaattctaaaagttgaagcctccatcaccaatctgttctcacacacgatgacaactttcatgtttccgtttgtggctacccaatt |
51844408 |
T |
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| Q |
211 |
ccaag |
215 |
Q |
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| T |
51844409 |
ccaag |
51844413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 51844506 - 51844587
Alignment:
| Q |
308 |
ctctatctctccgaacagcggtccatttctacaaacaaccggaggacgtttcagattcccggttgccaatggccgctgttcg |
389 |
Q |
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| T |
51844506 |
ctctatctctccgaacagcggtccatttctacaaacaaccggaggacgtttcagattcccggttgccaatggccgctgttcg |
51844587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 466 - 546
Target Start/End: Original strand, 51844664 - 51844744
Alignment:
| Q |
466 |
aaactcaaacaatccttcacaaacacgcaatctcttgcatcatggcttcctaatcaaaatccatgttcttcaagatgggtt |
546 |
Q |
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| T |
51844664 |
aaactcaaacaatccttcacaaacacgcaatctcttgcatcatggcttcctaatcaaaatccatgttcttcaagatgggtt |
51844744 |
T |
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