View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_12 (Length: 562)
Name: NF7665_low_12
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Original strand, 29068312 - 29068848
Alignment:
| Q |
18 |
gaatgggaccacactcagctaaaatatcggtatcgaaatgccatgtgaaccacaaaccatgaaatgtaacgttatannnnnnnn--caaaaaca--aata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
29068312 |
gaatgggaccacactcagctaaaatatcggtatcgaaatgccatgtgaaccacaaaccatgaaatgtaacgttatattttttttttcaaaaacataaata |
29068411 |
T |
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| Q |
114 |
cannnnnnnagtaataataattaatgaagaattgtaccaattaatgaaggtggtactactaataaattgcagtnnnnnnncaacatgtgacagaactgtc |
213 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29068412 |
catttttttagtaataat------tgaagaattgtaccaattaatgaaggtggtactactaataaattgcagtaaaaaaacaacatgtgacagaactgtc |
29068505 |
T |
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| Q |
214 |
agt----actcaacaactcagtgatnnnnnnnnnnnnnnnnntgtaacaagtaacaactctatgtagatgatacatatgattgagaatcaaatctagtat |
309 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068506 |
agtcagtactcaacaactcagtgataaaaaaatttgaaaaaatgtaacaagtaacaactctatgtagatgatacatatgattgagaatcaaatctagtac |
29068605 |
T |
|
| Q |
310 |
tattcattcttcaatctcaaccttcaaaactaacnnnnnnncaaacacaaatgtctcaaccttttgtgttaatctctatttacattattaccatgcaact |
409 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068606 |
tattcattcttcaatctcaaccttcaaaactaacaaaaaaacaaacacaaatgtctcaaccttttgtgttaatctctatttacattattaccatgcaact |
29068705 |
T |
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| Q |
410 |
aactattctattttcaccatccacttctcattactcttctccatcaccaccagccacaccattcaatgaatctccccctacatctccctcttccacttac |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068706 |
aactattctattttcaccatccacttctcattactcttctccatcaccaccagccacaccattcaatgaatctccccctacatctccctcttccacttac |
29068805 |
T |
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| Q |
510 |
tccgaatggctgtccgcccacgccacttactactccgtctctg |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068806 |
tccgaatggctgtccgcccacgccacttactactccgtctctg |
29068848 |
T |
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