View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7665_low_13 (Length: 560)

Name: NF7665_low_13
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7665_low_13
NF7665_low_13
[»] chr5 (20 HSPs)
chr5 (275-454)||(38010611-38010790)
chr5 (275-454)||(29989957-29990136)
chr5 (275-454)||(13478042-13478221)
chr5 (279-456)||(13015380-13015557)
chr5 (275-456)||(13086748-13086929)
chr5 (275-454)||(13421007-13421186)
chr5 (301-448)||(10292894-10293039)
chr5 (280-454)||(11607532-11607705)
chr5 (289-454)||(33858536-33858700)
chr5 (280-453)||(19357261-19357432)
chr5 (279-455)||(1826258-1826433)
chr5 (324-407)||(37881185-37881268)
chr5 (296-454)||(33271630-33271787)
chr5 (280-398)||(39570097-39570214)
chr5 (280-386)||(9827788-9827894)
chr5 (410-452)||(42331069-42331111)
chr5 (335-398)||(42148201-42148263)
chr5 (149-191)||(16727813-16727855)
chr5 (161-192)||(38921455-38921486)
chr5 (421-454)||(4408372-4408405)
[»] chr3 (28 HSPs)
chr3 (275-454)||(47186170-47186349)
chr3 (269-454)||(42664662-42664847)
chr3 (274-449)||(31187072-31187247)
chr3 (276-455)||(34029287-34029466)
chr3 (280-454)||(44380254-44380427)
chr3 (284-452)||(33509684-33509851)
chr3 (281-393)||(50934501-50934613)
chr3 (279-402)||(47426349-47426471)
chr3 (293-455)||(37742738-37742899)
chr3 (16-94)||(11138492-11138569)
chr3 (332-456)||(6022998-6023129)
chr3 (131-193)||(36164576-36164638)
chr3 (289-450)||(35094555-35094717)
chr3 (127-192)||(18912548-18912613)
chr3 (148-192)||(9099560-9099604)
chr3 (148-192)||(18939871-18939915)
chr3 (148-192)||(20997633-20997677)
chr3 (303-398)||(17466296-17466390)
chr3 (274-333)||(21963073-21963132)
chr3 (149-192)||(36163383-36163426)
chr3 (149-194)||(37465006-37465051)
chr3 (149-192)||(19801786-19801829)
chr3 (275-342)||(53440541-53440608)
chr3 (280-346)||(10018671-10018737)
chr3 (282-348)||(32319468-32319534)
chr3 (119-192)||(11137912-11137985)
chr3 (385-433)||(25859019-25859067)
chr3 (131-191)||(37463680-37463740)
[»] chr2 (28 HSPs)
chr2 (8-193)||(31620989-31621174)
chr2 (8-193)||(36666681-36666857)
chr2 (301-439)||(10163503-10163641)
chr2 (280-453)||(34392080-34392252)
chr2 (349-453)||(3668008-3668112)
chr2 (328-456)||(23863799-23863926)
chr2 (280-454)||(37357915-37358092)
chr2 (336-454)||(41095784-41095901)
chr2 (280-376)||(21603959-21604055)
chr2 (283-382)||(7381695-7381794)
chr2 (122-195)||(35306100-35306173)
chr2 (119-192)||(31620525-31620598)
chr2 (131-193)||(4753527-4753589)
chr2 (330-455)||(4779635-4779759)
chr2 (127-192)||(35298556-35298621)
chr2 (279-454)||(4775633-4775808)
chr2 (289-397)||(14565908-14566015)
chr2 (127-195)||(31622101-31622169)
chr2 (131-198)||(40894871-40894938)
chr2 (131-189)||(4755036-4755094)
chr2 (331-459)||(25275615-25275741)
chr2 (274-342)||(37811085-37811153)
chr2 (292-347)||(3668320-3668375)
chr2 (424-454)||(9207278-9207308)
chr2 (340-382)||(34903962-34904004)
chr2 (385-452)||(19619350-19619418)
chr2 (379-431)||(43154124-43154176)
chr2 (379-431)||(43159344-43159396)
[»] chr1 (23 HSPs)
chr1 (275-452)||(8809639-8809816)
chr1 (8-193)||(36574955-36575140)
chr1 (277-454)||(35998249-35998426)
chr1 (8-193)||(26530501-26530678)
chr1 (279-452)||(29119324-29119496)
chr1 (280-450)||(32676136-32676305)
chr1 (292-455)||(35534418-35534577)
chr1 (280-454)||(2569037-2569209)
chr1 (121-192)||(26529508-26529579)
chr1 (280-373)||(25161309-25161402)
chr1 (119-192)||(26531078-26531151)
chr1 (301-429)||(8462149-8462276)
chr1 (121-193)||(36573961-36574033)
chr1 (352-455)||(46435462-46435564)
chr1 (119-193)||(36575525-36575599)
chr1 (309-372)||(3688917-3688980)
chr1 (332-417)||(16679744-16679829)
chr1 (276-341)||(18056134-18056199)
chr1 (149-192)||(46150743-46150786)
chr1 (161-195)||(35063652-35063686)
chr1 (332-373)||(8555481-8555522)
chr1 (390-435)||(17431709-17431754)
chr1 (281-377)||(6223052-6223148)
[»] chr4 (24 HSPs)
chr4 (275-454)||(52012773-52012952)
chr4 (279-454)||(9799360-9799535)
chr4 (279-454)||(12473703-12473877)
chr4 (279-454)||(12528112-12528286)
chr4 (280-438)||(21260794-21260951)
chr4 (274-423)||(47943152-47943302)
chr4 (365-455)||(46720200-46720291)
chr4 (281-406)||(33249420-33249544)
chr4 (280-454)||(22343337-22343510)
chr4 (280-448)||(35869575-35869742)
chr4 (303-373)||(46719953-46720023)
chr4 (281-452)||(52910050-52910219)
chr4 (280-454)||(51811914-51812087)
chr4 (127-192)||(41774644-41774709)
chr4 (328-377)||(49999662-49999711)
chr4 (149-195)||(52189183-52189229)
chr4 (127-192)||(41780249-41780314)
chr4 (280-357)||(55590482-55590559)
chr4 (149-193)||(30829926-30829970)
chr4 (293-366)||(34829168-34829241)
chr4 (346-404)||(33174581-33174636)
chr4 (149-193)||(52190387-52190431)
chr4 (119-188)||(23545337-23545406)
chr4 (274-342)||(54277631-54277699)
[»] chr6 (15 HSPs)
chr6 (275-456)||(34245562-34245743)
chr6 (281-447)||(11113557-11113718)
chr6 (281-456)||(1211840-1212014)
chr6 (279-454)||(5403874-5404048)
chr6 (119-193)||(9448754-9448828)
chr6 (149-193)||(18193023-18193067)
chr6 (149-192)||(11020406-11020449)
chr6 (149-192)||(18191746-18191789)
chr6 (153-195)||(30758894-30758936)
chr6 (149-193)||(226120-226164)
chr6 (412-452)||(17330515-17330555)
chr6 (149-191)||(11020178-11020220)
chr6 (275-342)||(12800356-12800423)
chr6 (331-454)||(32644836-32644956)
chr6 (379-435)||(10126546-10126602)
[»] chr8 (17 HSPs)
chr8 (275-428)||(1514798-1514951)
chr8 (10-192)||(12887598-12887786)
chr8 (279-457)||(24337825-24338002)
chr8 (280-448)||(41179567-41179734)
chr8 (289-454)||(18168394-18168559)
chr8 (289-454)||(18631951-18632116)
chr8 (127-192)||(5005708-5005773)
chr8 (330-406)||(4708353-4708428)
chr8 (281-433)||(32825854-32826005)
chr8 (280-454)||(11254026-11254198)
chr8 (127-192)||(5014820-5014885)
chr8 (131-189)||(32564510-32564568)
chr8 (131-192)||(32565634-32565695)
chr8 (149-192)||(17863466-17863509)
chr8 (275-326)||(40530534-40530585)
chr8 (149-191)||(3872304-3872346)
chr8 (127-192)||(12888240-12888305)
[»] chr7 (15 HSPs)
chr7 (280-454)||(35341536-35341709)
chr7 (279-454)||(48250153-48250329)
chr7 (198-274)||(7163971-7164047)
chr7 (311-454)||(48072418-48072560)
chr7 (455-539)||(7164039-7164124)
chr7 (344-454)||(32694568-32694677)
chr7 (119-192)||(38516620-38516693)
chr7 (119-192)||(45291941-45292014)
chr7 (149-191)||(40601840-40601882)
chr7 (119-192)||(45296066-45296139)
chr7 (330-373)||(31306951-31306994)
chr7 (149-194)||(40600709-40600754)
chr7 (131-192)||(38517751-38517812)
chr7 (149-190)||(42537718-42537759)
chr7 (327-383)||(40856478-40856534)
[»] scaffold0229 (1 HSPs)
scaffold0229 (281-454)||(13003-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (280-454)||(34194-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (280-454)||(11195-11367)
[»] scaffold0263 (1 HSPs)
scaffold0263 (310-382)||(23168-23240)
[»] scaffold0115 (2 HSPs)
scaffold0115 (149-192)||(6098-6141)
scaffold0115 (149-192)||(13838-13881)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 5e-85; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 275 - 454
Target Start/End: Complemental strand, 38010790 - 38010611
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38010790 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 38010691  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38010690 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 38010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 275 - 454
Target Start/End: Original strand, 29989957 - 29990136
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29989957 ggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgata 29990056  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29990057 tatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 29990136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 275 - 454
Target Start/End: Complemental strand, 13478221 - 13478042
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  13478221 ggacaccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgata 13478122  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  13478121 tatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatcgtacacatgtgctatcc 13478042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 279 - 456
Target Start/End: Original strand, 13015380 - 13015557
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||     
T  13015380 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatatata 13015479  T
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccca 456  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  13015480 ttttttaaagtatgtgccacatgtcacatcttaattggctaatgttatataacataatgatacgcaagtggtatccca 13015557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 275 - 456
Target Start/End: Original strand, 13086748 - 13086929
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  13086748 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgata 13086847  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccca 456  Q
    | | ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  |||||| |||||||    
T  13086848 tgtattttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatgataagcaagtggtatccca 13086929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 275 - 454
Target Start/End: Complemental strand, 13421186 - 13421007
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||| ||||||| ||||||||||| | |||||||||||||||||||  |||||||||||  || ||| ||||||||||||||||||||||||||| |||    
T  13421186 ggacatcacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaata 13421087  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  13421086 tatgttttttaaagtgtatgccacatgacacaccttacttgactaatgttatataacataatggtacacaagtgctatcc 13421007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 301 - 448
Target Start/End: Original strand, 10292894 - 10293039
Alignment:
Q  301 accaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacat 400  Q
    |||||||||||||||||||| | ||||||| |||||||| ||| ||||||| ||| ||| || |||||||||||| |  ||||||||| ||||||||| |    
T  10292894 accaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatattt--tttttaaagggtgtgccacgt 10292991  T
Q  401 ggcacaccttaattggctaatgttatataacataatggtacacaagtg 448  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  10292992 ggcacaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 280 - 454
Target Start/End: Complemental strand, 11607705 - 11607532
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||||||||||||||| ||||||| |||||| ||||||| ||| | |||||||||| ||||||| |||||||||||||| |||||||||||||  |    
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatata-ct 11607607  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||| |||||||||  | ||||   |||||||  |||| |||||| ||| ||||||||||||||||||||    
T  11607606 tttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctatcc 11607532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 289 - 454
Target Start/End: Complemental strand, 33858700 - 33858536
Alignment:
Q  289 taccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag 388  Q
    ||||||||||| ||||||  |||||| ||||||| ||| | |||||||||| |||||||||||||||||||||| |||||||||||||  ||||||||||    
T  33858700 taccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-cttttttaaag 33858602  T
Q  389 tgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
     ||||||||| || ||||   |||||||  |||| |||||| ||| ||||||||||||||||||||    
T  33858601 ggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 33858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 280 - 453
Target Start/End: Complemental strand, 19357432 - 19357261
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| |||||||| || ||||||| |||||| ||||| | ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||  |    
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata--t 19357335  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatc 453  Q
    |||||||||  ||| |||| || ||||   |||||||  |||| |||||| ||| |||||||||||||||||||    
T  19357334 tttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 279 - 455
Target Start/End: Original strand, 1826258 - 1826433
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||| ||||||||| | ||||||| |||||| |||||   ||| |||||||| ||| ||||||| ||||||| || ||||||||||||||||||     
T  1826258 accacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatat- 1826356  T
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccc 455  Q
    ||||||||||| ||||||||||||||||  |||||||   |||| |||||| ||| ||| |||||||||| ||||||    
T  1826357 ttttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtgatatccc 1826433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 324 - 407
Target Start/End: Original strand, 37881185 - 37881268
Alignment:
Q  324 aataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacac 407  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||||| ||||    
T  37881185 aataagagtgtgccacataccaatgttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatggtacac 37881268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 296 - 454
Target Start/End: Original strand, 33271630 - 33271787
Alignment:
Q  296 aagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgc 395  Q
    |||| ||||||| |||||| ||||| | ||| |||||||| ||  || ||||||||||| |||||||||||||||||||||| ||||||||||  || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatat-ttttttaaaggatgcgc 33271728  T
Q  396 cacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||| |||||||   |||||||  |||  |||||| ||| |||||||| |||||||||||    
T  33271729 cacgtggcacattctaattgggcaatagtatataccattatggtacataagtgctatcc 33271787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 280 - 398
Target Start/End: Complemental strand, 39570214 - 39570097
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| || |||||| | | ||||| |||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||| |||||||||||||  |    
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatata-ct 39570116  T
Q  380 tttttaaagtgtgtgccac 398  Q
    ||||||||| |||||||||    
T  39570115 tttttaaagggtgtgccac 39570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 386
Target Start/End: Original strand, 9827788 - 9827894
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| ||||||| |||||| | ||    ||| ||||||| |||| ||||||| |||||||||||||  |||||||||||||| |    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatatatct 9827887  T
Q  380 tttttaa 386  Q
    |||||||    
T  9827888 tttttaa 9827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 452
Target Start/End: Complemental strand, 42331111 - 42331069
Alignment:
Q  410 taattggctaatgttatataacataatggtacacaagtgctat 452  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42331111 taattggctaatgttatataacataatggtacacaagtgctat 42331069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 42148201 - 42148263
Alignment:
Q  335 gccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccac 398  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatat-ttttttaaagggtgtaccac 42148263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 16727855 - 16727813
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttact 191  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  16727855 tgatagcgaggtacactttcagcgacccaaatgagggtttact 16727813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 192
Target Start/End: Complemental strand, 38921486 - 38921455
Alignment:
Q  161 acactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||||||||||||||||||||||||    
T  38921486 acactttcagggacccaaatgagggtttactc 38921455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 4408405 - 4408372
Alignment:
Q  421 tgttatataacataatggtacacaagtgctatcc 454  Q
    |||||||||||||||||| |||||||||||||||    
T  4408405 tgttatataacataatggcacacaagtgctatcc 4408372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 275 - 454
Target Start/End: Original strand, 47186170 - 47186349
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47186170 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 47186269  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186270 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 47186349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 269 - 454
Target Start/End: Original strand, 42664662 - 42664847
Alignment:
Q  269 atttgtggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttat 368  Q
    |||| |||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||    
T  42664662 atttctggacaccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttat 42664761  T
Q  369 ttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42664762 ttgatatatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatcc 42664847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 274 - 449
Target Start/End: Complemental strand, 31187247 - 31187072
Alignment:
Q  274 tggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgat 373  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31187247 tggacaccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgat 31187148  T
Q  374 atatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgc 449  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31187147 atatattttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtgc 31187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 276 - 455
Target Start/End: Complemental strand, 34029466 - 34029287
Alignment:
Q  276 gacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatat 375  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  34029466 gacaccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatat 34029367  T
Q  376 atgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccc 455  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34029366 atgttttttaaagtgtgtgtcacatatcacaccttaattggctaatgttatataacataatggtacacaagtgctatccc 34029287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 44380254 - 44380427
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| ||||||| ||||||  |||||| ||| | |||||| ||| || |||| ||||||||||||||||||||||||||||  |    
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatata-ct 44380352  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| |||||||||||||| |||||    
T  44380353 tttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttatcc 44380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 284 - 452
Target Start/End: Original strand, 33509684 - 33509851
Alignment:
Q  284 ttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttt 383  Q
    |||| ||||||||||| || |||  |||||| ||||||| ||| |||||||||||| ||||||| |||||||||| |||||||||||||| ||| |||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtat-ttttt 33509782  T
Q  384 taaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctat 452  Q
    |||||  ||||||||||||||||   ||||| |  |||| |||||| ||| || |||||||||||||||    
T  33509783 taaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctat 33509851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 50934501 - 50934613
Alignment:
Q  281 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 380  Q
    ||||||| ||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatatttt 50934600  T
Q  381 ttttaaagtgtgt 393  Q
     ||||||| ||||    
T  50934601 atttaaagggtgt 50934613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 279 - 402
Target Start/End: Original strand, 47426349 - 47426471
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||| ||||||||||| ||||||  |||||| ||||| | ||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||     
T  47426349 accacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatat- 47426447  T
Q  379 ttttttaaagtgtgtgccacatgg 402  Q
    |||||||||| |||||||||||||    
T  47426448 ttttttaaagggtgtgccacatgg 47426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 293 - 455
Target Start/End: Original strand, 37742738 - 37742899
Alignment:
Q  293 attaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtg 392  Q
    ||||||| ||||||| |||||| |||||   ||| ||||| |||||| |||||||||||| |||  ||||||||||||||||||| |||||||||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat-ttttttaaagagtg 37742836  T
Q  393 tgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccc 455  Q
    |||||| |||||||   |||||||  |||| |||||| ||| ||| |||||||||||||||||    
T  37742837 tgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctatccc 37742899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 11138492 - 11138569
Alignment:
Q  16 atgaagaaccctacgtatgagagttgatgttgttggttttcagaaagaagataatggtgttgttcttgatgttgttgat 94  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||| ||||    
T  11138492 atgaataaccctacgtatgagagttgatgttgttgg-tttgagaaagaagatgatggtgttgttgttgatgttggtgat 11138569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 456
Target Start/End: Original strand, 6022998 - 6023129
Alignment:
Q  332 tgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgc-------cacatggcacaccttaattggctaatgtt 424  Q
    |||||||||||| ||||||| ||| ||| | ||||||||||||||| |||||||||| ||||||       ||| |||||||||||||||||| ||| ||    
T  6022998 tgtgccacatactaatgttattttgtaagtactttatttgatatatattttttaaagggtgtgccacgtggcacgtggcacaccttaattggccaatatt 6023097  T
Q  425 atataacataatggtacacaagtgctatccca 456  Q
    |||||| || ||||||||||| || |||||||    
T  6023098 atataatattatggtacacaaatgatatccca 6023129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 36164576 - 36164638
Alignment:
Q  131 ttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    |||||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  36164576 ttgatcgagggactggtctgatagcgagggacactttcagggacccaaatgagggtttactct 36164638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 450
Target Start/End: Original strand, 35094555 - 35094717
Alignment:
Q  289 taccattaagggaccaatgttatataacattgactaataa--gagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaa 386  Q
    ||||||||| | |||| || |||||| ||||||||||| |  |||| |||||| |||||||||||||||||||||  |||||||||||||| ||||||||    
T  35094555 taccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatat-ttttttaa 35094653  T
Q  387 agtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgct 450  Q
    ||  |||| ||| || ||||   |||||||  |||| || ||| ||| ||||||||||| ||||    
T  35094654 aggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 18912613 - 18912548
Alignment:
Q  127 tttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||| ||||||| |  || |||| |||| ||||||||||||||||||||||||||||||||    
T  18912613 tttcttgattcagggacatggttaatagtgaggtacactttcagggacccaaatgagggtttactc 18912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 9099604 - 9099560
Alignment:
Q  148 ttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  9099604 ttgatagcgaggtacactttaagggacccaaatgagggtttactc 9099560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 18939871 - 18939915
Alignment:
Q  148 ttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  18939871 ttgatagcgaagtacactttcagggacccaaatgagggtttactc 18939915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 20997677 - 20997633
Alignment:
Q  148 ttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  20997677 ttgatagcgaggtacattttcagggacccaaatgagggtttactc 20997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 398
Target Start/End: Original strand, 17466296 - 17466390
Alignment:
Q  303 caatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccac 398  Q
    ||||| |||||| |||||   ||| |||||||| ||| || ||||||||||||||||||| |||| ||||||||| |||||||||| || ||||||    
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat-ttttttaaagggtatgccac 17466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 21963132 - 21963073
Alignment:
Q  274 tggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtg 333  Q
    |||||| ||||| | ||||||||||| | |||||||||||||||||||| ||||||||||    
T  21963132 tggacatcacttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 36163426 - 36163383
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  36163426 tgatagcgagggacactttcagggatccaaatgaaggtttactc 36163383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 37465006 - 37465051
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactcta 194  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||    
T  37465006 tgatagcgagcaacactttcagggacccaaattagggtttactcta 37465051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 19801829 - 19801786
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  19801829 tgatagcgaggtacactttcagggaccggaatgagggtttactc 19801786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 53440541 - 53440608
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacata 342  Q
    ||||||||||||| |||||||  |  ||||||||||||||||| |||| ||| | |||||||||||||    
T  53440541 ggacaccacttgtgtaccattgggataccaatgttatataacactgaccaatgaaagtgtgccacata 53440608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 10018737 - 10018671
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaa 346  Q
    |||||||| ||||||||| | |||||||||||||| |||||   ||||| |||||||||| ||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  282 acttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatg 348  Q
    |||||| ||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| ||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 11137985 - 11137912
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||| |||| |||||||||||  | | ||||||||||| ||| ||| || || ||||||||||||||||||    
T  11137985 tggttcgttttcatgatccagggatgtgtctgatagcgaggtacatttttagagaaccaaatgagggtttactc 11137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 25859019 - 25859067
Alignment:
Q  385 aaagtgtgtgccacatggcacaccttaattggctaatgttatataacat 433  Q
    |||| |||||||||||| |||||  |||||||| |||||||||||||||    
T  25859019 aaagggtgtgccacatgacacactctaattggccaatgttatataacat 25859067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 37463740 - 37463680
Alignment:
Q  131 ttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttact 191  Q
    ||||||||||||| |  |||||||||||  ||||||||||| ||||||  |||||||||||    
T  37463740 ttgatccagggacgtgcttgatagcgagaaacactttcaggaacccaagcgagggtttact 37463680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 8e-84; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 31620989 - 31621174
Alignment:
Q  8 cgaagaatatgaagaaccctacgtatgagagttgatgttgttggttttcagaaagaagataatggtgttgttcttgatgttgttgatgtttagttttgag 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31620989 cgaagaaaatgaagaaccctacgtatgagagttgatgttgttggttttcagaaagaagataatggtgttgttgttgatgttgttgatgtttagttttgag 31621088  T
Q  108 aaagatgatgatggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  31621089 aaagatgatgatggttcgatttcttgatccagggacatgtttgatagcgaggtacacttttagggacccaaatgaaggtttactct 31621174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 36666681 - 36666857
Alignment:
Q  8 cgaagaatatgaagaaccctacgtatgagagttgatgttgttggttttcagaaagaagataatggtgttgttcttgatgttgttgatgtttagttttgag 107  Q
    ||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |         |||||||||||||||||||    
T  36666681 cgaagaaaatgaagaaccctacatatgagagttgacgttgttggttttcagaaagaagataatggtgttgct---------gttgatgtttagttttgag 36666771  T
Q  108 aaagatgatgatggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| | | ||||||||    
T  36666772 aaagatgatgatggttcgatttcttgatccagggacatatttgatagcgaggtacacttttagggacccaaataaagctttactct 36666857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 301 - 439
Target Start/End: Original strand, 10163503 - 10163641
Alignment:
Q  301 accaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacat 400  Q
    |||||||||||||||||||||| ||||| | ||||||||||||  || |||||||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  10163503 accaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctacat 10163602  T
Q  401 ggcacaccttaattggctaatgttatataacataatggt 439  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  10163603 ggcataccttaattgactaatgttatataacataatggt 10163641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 453
Target Start/End: Complemental strand, 34392252 - 34392080
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||| ||| ||||||| |||||| ||||| | ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat-t 34392154  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatc 453  Q
    ||||||||| |||||||||||||||||   |||||||  |||| |||||| ||| |||||||||||||||||||    
T  34392153 tttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 3668112 - 3668008
Alignment:
Q  349 ttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 448  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  3668112 ttactttataagtgctttattttatatatgttttttaaagtgagtgccacatggcacatcttaattggctaatattatataatataatggtacacaagtg 3668013  T
Q  449 ctatc 453  Q
    |||||    
T  3668012 ctatc 3668008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 328 - 456
Target Start/End: Complemental strand, 23863926 - 23863799
Alignment:
Q  328 agagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttata 427  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||   |||||||  |||| ||||    
T  23863926 agagtgtgccacctaccaatgttactttataaatgctttatttgatatat-atttttaaagggtgtgccacatggcacattctaattggacaatgatata 23863828  T
Q  428 taacataatggtacacaagtgctatccca 456  Q
    || ||| ||||||||| ||||||||||||    
T  23863827 tatcattatggtacactagtgctatccca 23863799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 280 - 454
Target Start/End: Complemental strand, 37358092 - 37357915
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata---ta 376  Q
    |||||||| || |||||||| ||||||| |||||| ||||||||||| |||||||| ||| || ||||||||||||||||||||||||||| |||   |     
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatattttt 37357993  T
Q  377 tgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    | ||||||||| | |||||||| || ||||   |||||||  |||| ||||||  || ||| ||||||||||||||||    
T  37357992 ttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctatcc 37357915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 336 - 454
Target Start/End: Complemental strand, 41095901 - 41095784
Alignment:
Q  336 ccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataa 435  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||  || |||||||||||||||| ||| |||| |||| |||||| ||| |    
T  41095901 ccacctaccaatgttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacaccctaaatggccaatggtatataccatta 41095803  T
Q  436 tggtacacaagtgctatcc 454  Q
    ||||||  |||||||||||    
T  41095802 tggtacctaagtgctatcc 41095784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatata 376  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||| ||| | |||||  ||| |||||||||||||||||||||| |||||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 382
Target Start/End: Original strand, 7381695 - 7381794
Alignment:
Q  283 cttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtttt 382  Q
    ||||| ||||||||||| ||||||| ||||||  |||| | ||| |||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatatatttttt 7381794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 35306100 - 35306173
Alignment:
Q  122 ttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactctaa 195  Q
    |||| ||||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  35306100 ttcgttttcttgattcagggacatgtttgatagcgaggtacactttcagggacctaaatgagggtttactctaa 35306173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 31620598 - 31620525
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||| ||||||||| || |||| ||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  31620598 tggttcgttttcttgattcaaggacgtatctgatagcgaggtacactttcagggactcaaatgagggtttactc 31620525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 4753589 - 4753527
Alignment:
Q  131 ttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    ||||||||||||||  | |||||||||| |||||||||||||||||||| |||||||||||||    
T  4753589 ttgatccagggactggtctgatagcgagagacactttcagggacccaaacgagggtttactct 4753527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 455
Target Start/End: Original strand, 4779635 - 4779759
Alignment:
Q  330 agtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatata 429  Q
    |||||||| | || |||||||||||||||||| ||||||||||||||| ||||||||||  |||| ||| || ||||   |||||||  |||| ||||||    
T  4779635 agtgtgccgcctaacaatgttactttataaatactttatttgatatat-ttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatata 4779733  T
Q  430 acataatggtacacaagtgctatccc 455  Q
     ||| ||| |||||||||| ||||||    
T  4779734 ccattatgatacacaagtgttatccc 4779759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 35298621 - 35298556
Alignment:
Q  127 tttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||| ||||||| |  |||||||||||| ||||||||||| ||||||||||||||||||||    
T  35298621 tttcttgattcagggacgtggttgatagcgaggtacactttcaggaacccaaatgagggtttactc 35298556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 454
Target Start/End: Original strand, 4775633 - 4775808
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaat-gctttatttgatatat 377  Q
    ||||||| | ||||||||||  ||||||| ||||||  |||| | ||| ||| |||  ||  ||||||| ||||||||| ||| | ||||||| ||||||    
T  4775633 accacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatat 4775732  T
Q  378 gttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
     ||||||||||  ||||||||||||||||  ||||||||  |||| |||||| ||| ||||||||||| || |||||    
T  4775733 -ttttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaaatgttatcc 4775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 397
Target Start/End: Complemental strand, 14566015 - 14565908
Alignment:
Q  289 taccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag 388  Q
    ||||| ||||| |||||||||||||| ||||||  ||  ||||||||| |||||||||| ||| ||||||| | ||| |||||||||| |||||||||||    
T  14566015 taccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatata-gttttttaaag 14565917  T
Q  389 tgtgtgcca 397  Q
      |||||||    
T  14565916 gatgtgcca 14565908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 31622101 - 31622169
Alignment:
Q  127 tttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactctaa 195  Q
    ||||||||| ||||||| |  |||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  31622101 tttcttgattcagggacgtggttgataacgaggtacactttcagggacccaaataagggtttactctaa 31622169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 40894871 - 40894938
Alignment:
Q  131 ttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactctaagaa 198  Q
    ||||||||||||| ||  ||||||||||| ||||||| ||||| |||||||||||||||||| |||||    
T  40894871 ttgatccagggacgtacctgatagcgaggtacacttttagggatccaaatgagggtttactcaaagaa 40894938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 4755036 - 4755094
Alignment:
Q  131 ttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggttta 189  Q
    |||||| |||||| | | |||||||||||||||||||||| ||||||||||||||||||    
T  4755036 ttgatctagggacgtgtctgatagcgagggacactttcagagacccaaatgagggttta 4755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 459
Target Start/End: Complemental strand, 25275741 - 25275615
Alignment:
Q  331 gtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataa 430  Q
    ||||||||| || |||||||||||| ||||| ||||||||||||||  ||||||||||  |||||||| ||  |||   |||||||  |||| ||||||     
T  25275741 gtgtgccacctatcaatgttacttt-taaatactttatttgatatac-ttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatac 25275644  T
Q  431 cataatggtacacaagtgctatcccacat 459  Q
    ||| ||| |||| ||||||||||| ||||    
T  25275643 cattatgatacagaagtgctatccgacat 25275615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 37811085 - 37811153
Alignment:
Q  274 tggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacata 342  Q
    |||||||||||||| |||||||  |  |||||||||||||||||||| | ||| | |||||||||||||    
T  37811085 tggacaccacttgtgtaccattgggataccaatgttatataacattggccaatgaaagtgtgccacata 37811153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 3668375 - 3668320
Alignment:
Q  292 cattaagggaccaatgttatataacattgactaataagagtgtgccacataccaat 347  Q
    |||||||| ||||||||||||||||||||| |  |||||||||| |||||| ||||    
T  3668375 cattaaggtaccaatgttatataacattgattggtaagagtgtgtcacatatcaat 3668320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 454
Target Start/End: Original strand, 9207278 - 9207308
Alignment:
Q  424 tatataacataatggtacacaagtgctatcc 454  Q
    |||||||||||||||||||||||||||||||    
T  9207278 tatataacataatggtacacaagtgctatcc 9207308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 34903962 - 34904004
Alignment:
Q  340 ataccaatgttactttataaatgctttatttgatatatgtttt 382  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||    
T  34903962 atactaatgttattttataaatgctttatttgatatatttttt 34904004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 19619418 - 19619350
Alignment:
Q  385 aaagtgtgtgccacatggcacaccttaattggctaatgttatataacat-aatggtacacaagtgctat 452  Q
    |||| ||||||||| || || |||||| ||||| |||||||||||| || | |||||||||||||||||    
T  19619418 aaagggtgtgccacgtgacataccttatttggccaatgttatataatatcagtggtacacaagtgctat 19619350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 43154176 - 43154124
Alignment:
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataac 431  Q
    |||||||||| ||||||||| ||||||||| | |||||  |||||||||||||    
T  43154176 ttttttaaagggtgtgccacgtggcacaccctgattggacaatgttatataac 43154124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 43159344 - 43159396
Alignment:
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataac 431  Q
    |||||||||| ||||||||| ||||||||| | |||||  |||||||||||||    
T  43159344 ttttttaaagggtgtgccacgtggcacaccctgattggacaatgttatataac 43159396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 275 - 452
Target Start/End: Complemental strand, 8809816 - 8809639
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  8809816 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgata 8809717  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctat 452  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8809716 tatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtgctat 8809639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 36575140 - 36574955
Alignment:
Q  8 cgaagaatatgaagaaccctacgtatgagagttgatgttgttggttttcagaaagaagataatggtgttgttcttgatgttgttgatgtttagttttgag 107  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  36575140 cgaagaaaatgaagaaccctacatatgagagttgatgttgttggttttcagaaagaagataatgatgttgttgttgatgttgttgatgtttagttttgag 36575041  T
Q  108 aaagatgatgatggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||  |||||||||    
T  36575040 aaagatgatgatggttcgatttcttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaaagtttactct 36574955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 277 - 454
Target Start/End: Original strand, 35998249 - 35998426
Alignment:
Q  277 acaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatata 376  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| || ||||||| |||||    
T  35998249 acaccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatata 35998348  T
Q  377 tgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  35998349 tgttttttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacataatggtacacaggtgctatcc 35998426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 26530678 - 26530501
Alignment:
Q  8 cgaagaatatgaagaaccctacgtatgagagttgatgttgttggtttt-cagaaagaagataatggtgttgttcttgatgttgttgatgtttagttttga 106  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||         ||||||||||||||||||    
T  26530678 cgaagaaaatgaagaaccctacgtatgagagttggtgttgttggtttttcataaagaagataatggtgttgtt---------gttgatgtttagttttga 26530588  T
Q  107 gaaagatgatgatggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  26530587 gaaagatgatgatggttcgatttcttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaaggtttactct 26530501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 279 - 452
Target Start/End: Complemental strand, 29119496 - 29119324
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| || || |||||||||||| ||||||||||||||||||     
T  29119496 accacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatat- 29119398  T
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctat 452  Q
    |||||||||| |||||||||||||||||   |||||||  |||  |||||| | | ||||||||||| ||||||    
T  29119397 ttttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 280 - 450
Target Start/End: Original strand, 32676136 - 32676305
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| ||||||| |||||| ||||| | ||| ||| ||  |||| ||||||||||||||||||||||||||||||||||||| |    
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat-t 32676234  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgct 450  Q
    |||||||||  ||||||||||||||||   |||||||  |||| |||||| ||| || |||||||| ||||    
T  32676235 tttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 292 - 455
Target Start/End: Original strand, 35534418 - 35534577
Alignment:
Q  292 cattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgt 391  Q
    |||||||  ||||||||||||||||||||   | | |||||||||||||||| ||||| | ||||||| || ||||||| ||||    ||||||||| ||    
T  35534418 cattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttatttaatat----tttttaaagggt 35534513  T
Q  392 gtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccc 455  Q
    |||||||||| ||||||||||||||| ||| ||||||||||| ||||| ||||||| |||||||    
T  35534514 gtgccacatgacacaccttaattggccaatattatataacattatggttcacaagttctatccc 35534577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 2569037 - 2569209
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| ||||||| |||||| ||||  | ||| |||||||||||| |||||||||||| |||  ||||||||||||||||||  |    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata--t 2569134  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||| ||||||||  |||||||   ||||| |  |||  |||||| ||| ||| ||||||||||||||||    
T  2569135 tttttaaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatcc 2569209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 26529579 - 26529508
Alignment:
Q  121 gttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||| ||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||    
T  26529579 gttcgttttcttgattcagggacgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 25161309 - 25161402
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgat 373  Q
    |||||||| ||||||||| |   ||||| |||||| ||||||| ||| | |||||||||| || ||||||||||||||||||| ||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 26531078 - 26531151
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||| ||||||||| ||||||| | | | ||||||||| ||||||||||||||| ||||||||||||||||    
T  26531078 tggttcgttttcttgattcagggacgtgtctaatagcgaggtacactttcagggaccaaaatgagggtttactc 26531151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 429
Target Start/End: Original strand, 8462149 - 8462276
Alignment:
Q  301 accaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacat 400  Q
    ||||||| |||||| ||||||  ||| | |||||||||| ||||||||||| |||||||||| ||||||| |||||  |||||||||| | ||||||| |    
T  8462149 accaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatata-cttttttaaagggcgtgccacgt 8462247  T
Q  401 ggcacaccttaattggctaatgttatata 429  Q
    | ||||  ||||||||  |||| ||||||    
T  8462248 gacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 36574033 - 36573961
Alignment:
Q  121 gttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    ||||| ||||||||| ||||||| |  |||||||||||| ||||||||||||||| ||||||| |||||||||    
T  36574033 gttcgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacctaaatgagtgtttactct 36573961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 46435564 - 46435462
Alignment:
Q  352 ctttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgcta 451  Q
    ||||||| |||||||||||||||||| ||||| |||| ||||| |||||| ||||   |||||||  |||| |||||| ||| ||||||||||||| |||    
T  46435564 ctttatagatgctttatttgatatatattttt-aaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtccta 46435466  T
Q  452 tccc 455  Q
    ||||    
T  46435465 tccc 46435462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 36575525 - 36575599
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    ||||||| |||||||||  | |||| | | ||||||||||| |||||||||||||| ||||||||||||||||||    
T  36575525 tggttcgttttcttgatttaaggacgtgtctgatagcgaggtacactttcagggactcaaatgagggtttactct 36575599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
Q  309 tatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttga 372  Q
    |||||| ||||||| ||| ||||||| | || |||||||||||||||||||||| |||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 16679744 - 16679829
Alignment:
Q  332 tgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggc 417  Q
    ||||||| |||| ||| ||  ||||||| ||||||||||||||||| |||||||||| ||||| ||| || |||| | ||||||||    
T  16679744 tgtgccatatacaaatattcttttataagtgctttatttgatatatattttttaaagggtgtgtcacgtgacacatcctaattggc 16679829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 18056199 - 18056134
Alignment:
Q  276 gacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacat 341  Q
    |||||||||||| |||||||||   ||||||||||||||| |||||| ||| | ||||||||||||    
T  18056199 gacaccacttgtgtaccattaaactaccaatgttatataatattgaccaatgaaagtgtgccacat 18056134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 46150786 - 46150743
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||||||||||||||| || ||| |||||||||||||    
T  46150786 tgatagcgagggacactttcaggaactcaagtgagggtttactc 46150743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 35063652 - 35063686
Alignment:
Q  161 acactttcagggacccaaatgagggtttactctaa 195  Q
    |||||||||| ||||||||||||||||||||||||    
T  35063652 acactttcagagacccaaatgagggtttactctaa 35063686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 8555481 - 8555522
Alignment:
Q  332 tgtgccacataccaatgttactttataaatgctttatttgat 373  Q
    |||| ||||||||||||||| |||||||||| ||||||||||    
T  8555481 tgtgtcacataccaatgttattttataaatgttttatttgat 8555522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 17431709 - 17431754
Alignment:
Q  390 gtgtgccacatggcacaccttaattggctaatgttatataacataa 435  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||    
T  17431709 gtgtgccacatggcacaccctgattggacaatgttatataacataa 17431754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 377
Target Start/End: Original strand, 6223052 - 6223148
Alignment:
Q  281 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatat 377  Q
    ||||||| ||||||||| | | |||||||||||| ||||||  ||| |  ||||| || ||| |||||||| ||||||| |  ||||||||||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatat 6223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 275 - 454
Target Start/End: Original strand, 52012773 - 52012952
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  52012773 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgata 52012872  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52012873 tatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatcc 52012952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 279 - 454
Target Start/End: Complemental strand, 9799535 - 9799360
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||||||||||||||| |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  9799535 accacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatg 9799436  T
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    |||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9799435 ttttttaaagtgtgtgtcacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatcc 9799360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 279 - 454
Target Start/End: Original strand, 12473703 - 12473877
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||||||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||     
T  12473703 accacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat- 12473801  T
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    |||||||||| ||||| |||||| ||||   ||||||   |||| |||||| ||| ||||||||||||||||||||    
T  12473802 ttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 279 - 454
Target Start/End: Original strand, 12528112 - 12528286
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||||||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||     
T  12528112 accacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat- 12528210  T
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    |||||||||| ||||| |||||| ||||   ||||||   |||| |||||| ||| ||||||||||||||||||||    
T  12528211 ttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12528286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 280 - 438
Target Start/End: Original strand, 21260794 - 21260951
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||| ||||||||||||| ||||||| |||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||| |||||||||||||| |    
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-t 21260892  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatgg 438  Q
    ||||||||| |||||||||||||||||   ||||||| |||||||||||| ||| ||||    
T  21260893 tttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatgg 21260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 274 - 423
Target Start/End: Original strand, 47943152 - 47943302
Alignment:
Q  274 tggacaccacttgtataccattaagggaccaatgttatataacatt-gactaataagagtgtgccacataccaatgttactttataaatgctttatttga 372  Q
    |||||||||||||| |||||||||   ||||||||||||||| ||| ||| ||||| | |||||||||||||||| ||| |||||||||  |||||||||    
T  47943152 tggacaccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttga 47943251  T
Q  373 tatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgt 423  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  47943252 tatatgttttttaaaatgtgtgccacatgtcacaccttaattagctaatgt 47943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 46720200 - 46720291
Alignment:
Q  365 ttatttgatatatgtttt-ttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccc 455  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  46720200 ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaattgactaatgttatataacataatggtaaagaagtgctatccc 46720291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 33249544 - 33249420
Alignment:
Q  281 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 380  Q
    ||||||| ||||||||||| || |||| ||||||  |||| | ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||  |    
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatat-at 33249446  T
Q  381 ttttaaagtgtgtgccacatggcaca 406  Q
    |||||||| |||||||||||||||||    
T  33249445 ttttaaagggtgtgccacatggcaca 33249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 22343337 - 22343510
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| | ||||| |||||| ||||||| ||| |||||||| ||  || |||||||||||||||||||||||||||||||||| |    
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat-t 22343435  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
     ||||||||  ||||||||||| ||||   ||||||   |||| |||||| ||| |||||||||| ||| |||||    
T  22343436 attttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacacaggtgatatcc 22343510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 280 - 448
Target Start/End: Complemental strand, 35869742 - 35869575
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||| ||| | | |||||||| ||||||||||||| |||||||| |||||||||||||  |    
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata-ct 35869644  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 448  Q
    ||||||||| ||||||||| || ||||   ||||||   |||| |||||| ||| |||||| |||||||    
T  35869643 tttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 46719953 - 46720023
Alignment:
Q  303 caatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgat 373  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  46719953 caatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 281 - 452
Target Start/End: Complemental strand, 52910219 - 52910050
Alignment:
Q  281 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 380  Q
    ||||||| |||||| | || |||||||||||||| ||||| | ||| | |||||||||| ||||||| |||||||||||||||||||||||||| |        
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgataaa--aa 52910122  T
Q  381 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctat 452  Q
      |||||  || |||||| ||||||||| ||||||   |||| |||||| |||||||||||| |||||||||    
T  52910121 aattaaaaggtatgccacgtggcacaccctaattgatcaatggtatataccataatggtacataagtgctat 52910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 51811914 - 51812087
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    ||||| || ||||||||||| | ||| | ||||||  |||| | ||| ||||| |||||| |||||||||||||||||||||  ||| |||||||||| |    
T  51811914 ccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatat-t 51812012  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||| ||||||||  || ||||   ||||||| ||||| |||||| ||| ||| || ||||||| |||||    
T  51812013 tttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtgttatcc 51812087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 41774709 - 41774644
Alignment:
Q  127 tttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||| ||||||||    
T  41774709 tttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagagtttactc 41774644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 49999711 - 49999662
Alignment:
Q  328 agagtgtgccacataccaatgttactttataaatgctttatttgatatat 377  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  49999711 agagtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 52189229 - 52189183
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactctaa 195  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||    
T  52189229 tgatagcgaggtgcactttcagggacccaaatgagggtttactctaa 52189183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 41780249 - 41780314
Alignment:
Q  127 tttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||| |||| || |  |||||||||||| |||||||||| |||||||||||||||||||||    
T  41780249 tttcttgattcaggaacgtggttgatagcgaggtacactttcagagacccaaatgagggtttactc 41780314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 55590482 - 55590559
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttat 357  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||  ||| | |||||| ||| |||||||||||||||||    
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 30829970 - 30829926
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  30829970 tgatagcgagcaacactttcagggacccaaatgagggtttactct 30829926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 34829241 - 34829168
Alignment:
Q  293 attaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgcttt 366  Q
    ||||||| ||||||| |||||| || || | ||| | |||||| ||| ||||||||||||||||||||||||||    
T  34829241 attaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 404
Target Start/End: Original strand, 33174581 - 33174636
Alignment:
Q  346 atgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggca 404  Q
    ||||||||||||||||| |||||||||||||   ||||||||| ||||||||| |||||    
T  33174581 atgttactttataaatgttttatttgatata---tttttaaagggtgtgccacgtggca 33174636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 52190387 - 52190431
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    ||||||||||   ||||||||||||||||||||||||||||||||    
T  52190387 tgatagcgagatgcactttcagggacccaaatgagggtttactct 52190431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 23545337 - 23545406
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggttt 188  Q
    ||||||| ||||||||| ||| ||| | | ||||||| ||| ||||||||| |||| |||||||||||||    
T  23545337 tggttcgttttcttgattcagagacgtgtctgatagcaaggtacactttcaaggactcaaatgagggttt 23545406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 54277699 - 54277631
Alignment:
Q  274 tggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacata 342  Q
    |||||||||||||| |||||||  |  ||||||||||||||||||||   ||| | |||||||||||||    
T  54277699 tggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 54277631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 7e-72; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 275 - 456
Target Start/End: Original strand, 34245562 - 34245743
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| |  ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  34245562 ggacaccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgata 34245661  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccca 456  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  34245662 tatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataatataatggtacacaagtgttatccca 34245743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 281 - 447
Target Start/End: Original strand, 11113557 - 11113718
Alignment:
Q  281 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 380  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||     ||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat-----tt 11113651  T
Q  381 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagt 447  Q
    ||||||||  || |||||||||||||||||||||| | ||||||||||| ||| |||||||| ||||    
T  11113652 ttttaaaggatgcgccacatggcacaccttaattgaccaatgttatataccattatggtacataagt 11113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 281 - 456
Target Start/End: Complemental strand, 1212014 - 1211840
Alignment:
Q  281 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 380  Q
    ||||||| ||||||||||| ||||||| |||||| ||||| ||||| || ||||||||| |  ||||||||||||||  |||||||||||||||||| ||    
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-tt 1211916  T
Q  381 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccca 456  Q
    |||||||| ||||||||| |||||||   |||| ||  |||| |||||| ||| |||||||||||||| |||||||    
T  1211915 ttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgatatccca 1211840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 279 - 454
Target Start/End: Complemental strand, 5404048 - 5403874
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||| ||||||||||| || |||| ||||||  ||||   | | ||||| |||||| |||||||||||||||||| ||| ||||||||||||||     
T  5404048 accacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatat- 5403950  T
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    |||||||||| | ||  |||||| ||||   |||||||  |||| |||||| ||| ||||||||||||||||||||    
T  5403949 ttttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctatcc 5403874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 9448754 - 9448828
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    |||||||||| |||||||||||||  | | ||||||||||| |||||||||||||||||||||||||||||||||    
T  9448754 tggttcgattccttgatccagggatgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactct 9448828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 18193023 - 18193067
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18193023 tgatagcgagggacactttcagggacccaaatgagggtttactct 18193067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 11020406 - 11020449
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11020406 tgatagcgagggacactttcagggacccaaatgagggtttactc 11020449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 18191789 - 18191746
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  18191789 tgatagcgtgggacactttcagggacccaaatgagggtttactc 18191746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 30758894 - 30758936
Alignment:
Q  153 agcgagggacactttcagggacccaaatgagggtttactctaa 195  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  30758894 agcgagggacactttcaaggacccaaatgagggtttactctaa 30758936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 226164 - 226120
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactct 193  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  226164 tgatagcgaggcacactttcaaggacccaaatgagggtttactct 226120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 17330555 - 17330515
Alignment:
Q  412 attggctaatgttatataacataatggtacacaagtgctat 452  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  17330555 attggctaatattatataacataatggtacacaagtgctat 17330515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 11020220 - 11020178
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttact 191  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  11020220 tgatagtgagggacactttcagggacccaaatgagagtttact 11020178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 12800423 - 12800356
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacata 342  Q
    ||||||||||||| |||||||  |  |||||||||||||||||||| ||||| |  ||||||||||||    
T  12800423 ggacaccacttgtgtaccattgggataccaatgttatataacattggctaatgaaggtgtgccacata 12800356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 454
Target Start/End: Complemental strand, 32644956 - 32644836
Alignment:
Q  331 gtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataa 430  Q
    ||||| ||| ||| |||||||||||| |||| ||||||||| ||||| |||||||||| ||||||||||||  |||   ||||||   |||| ||||||     
T  32644956 gtgtgtcacctacaaatgttacttta-aaatactttatttgttatat-ttttttaaagggtgtgccacatgatacaatctaattgaacaatggtatatac 32644859  T
Q  431 cataatggtacacaagtgctatcc 454  Q
    ||| || |||||||||||||||||    
T  32644858 cattat-gtacacaagtgctatcc 32644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 10126546 - 10126602
Alignment:
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataa 435  Q
    ||||| |||| ||||||||| ||||||||| | |||||  |||||||||||||||||    
T  10126546 tttttaaaagggtgtgccacgtggcacacccttattggacaatgttatataacataa 10126602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 275 - 428
Target Start/End: Original strand, 1514798 - 1514951
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 374  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  1514798 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgata 1514897  T
Q  375 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatat 428  Q
    ||| ||||||||| ||||| ||| ||| |||||||||||||| |||||||||||    
T  1514898 tatattttttaaaatgtgtaccatatgtcacaccttaattggttaatgttatat 1514951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 12887598 - 12887786
Alignment:
Q  10 aagaatatgaagaaccctacgtatgagag--ttgatgt----tgttggttttcagaaagaagataatggtgttgttcttgatgttgttgatgtttagttt 103  Q
    ||||| |||||||||||||||||||||||  |||||||    |||| |||||||||||||| || |||||| ||||  |||||||| |||||||| ||||    
T  12887598 aagaaaatgaagaaccctacgtatgagagagttgatgtatgttgttagttttcagaaagaatatgatggtggtgttgatgatgttgctgatgtttggttt 12887697  T
Q  104 tgagaaagatgatgatggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||| |||||||||||||||||||||||||||||  | | |||| |||||| ||||||||||||||||||||||||||||||||    
T  12887698 tgagaaagaagatgatggttcgatttcttgatccagggatatgtctgatcgcgaggtacactttcagggacccaaatgagggtttactc 12887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 279 - 457
Target Start/End: Complemental strand, 24338002 - 24337825
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||| ||| ||||||| | ||||| |||||| ||| |   ||| |||||||||||  |||||||||||||||||| ||||||||||||||||||     
T  24338002 accacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatat- 24337904  T
Q  379 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcccac 457  Q
     ||||||||| ||||||||||| |||||   |||||||  |||| |||||| ||| |||||||||||||||||||||||    
T  24337903 atttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatcccac 24337825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 280 - 448
Target Start/End: Complemental strand, 41179734 - 41179567
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| ||||||| |||||| ||||| | ||| | |||||| ||| |||| ||||||||||||||||| ||||||| |||||| |    
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat-t 41179636  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 448  Q
    ||||||| |  ||||||||||||||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  41179635 tttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 289 - 454
Target Start/End: Original strand, 18168394 - 18168559
Alignment:
Q  289 taccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag 388  Q
    ||||||||||| ||||||| |||||| ||||||  ||| ||||||| |||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  18168394 taccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaag 18168493  T
Q  389 tgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
      |||||||| || ||||   ||||| | ||||  |||||| ||| ||||||||||  ||||||||    
T  18168494 gatgtgccacgtgacacaatctaattaggtaataatatataccattatggtacacagatgctatcc 18168559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 289 - 454
Target Start/End: Original strand, 18631951 - 18632116
Alignment:
Q  289 taccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag 388  Q
    ||||||||||| ||||||| |||||| ||||||  ||| ||||||| |||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  18631951 taccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaag 18632050  T
Q  389 tgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
      |||||||| || ||||   ||||| | ||||  |||||| ||| ||||||||||  ||||||||    
T  18632051 gatgtgccacgtgacacaatctaattaggtaataatatataccattatggtacacagatgctatcc 18632116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 5005773 - 5005708
Alignment:
Q  127 tttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||    
T  5005773 tttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 5005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 4708428 - 4708353
Alignment:
Q  330 agtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcaca 406  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||| |||||||    
T  4708428 agtgtgtcacctaccaatgttactttataaatgttttatttgatatat-atttttaaagggtgtgccacgtggcaca 4708353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 433
Target Start/End: Complemental strand, 32826005 - 32825854
Alignment:
Q  281 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 380  Q
    ||||||| ||||||||| | | ||||||| |||| ||||| | ||| ||||| || |||||| |||||||| ||||||  || |||||||||||||| ||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatat-tt 32825907  T
Q  381 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacat 433  Q
    ||| ||||  |||| |||||| |||| |||||||||| |||  ||||||||||    
T  32825906 tttaaaaggttgtgtcacatgacacatcttaattggccaattatatataacat 32825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 454
Target Start/End: Complemental strand, 11254198 - 11254026
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| |||||||||   ||||||| |||||| ||||||| | ||  ||| | |||| |||||||||||||||||||||| |||||||||||||       
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-ca 11254101  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||| ||||||||| || ||||   ||| ||   |||| |||||| ||| ||||||||||| ||||||||    
T  11254100 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 5014820 - 5014885
Alignment:
Q  127 tttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||| || |||| |  |||||||||||| ||||||||||||||||||||||||||||||||    
T  5014820 tttcttgattcaaggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 5014885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 32564568 - 32564510
Alignment:
Q  131 ttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggttta 189  Q
    |||||| |||||||  | ||||||||||||||||||||| |||||||||||||||||||    
T  32564568 ttgatcgagggactggtctgatagcgagggacactttcaaggacccaaatgagggttta 32564510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 32565634 - 32565695
Alignment:
Q  131 ttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    |||||| |||||||  | ||||||||||||||||||||||||||| ||| ||||||||||||    
T  32565634 ttgatcgagggactggtctgatagcgagggacactttcagggacctaaacgagggtttactc 32565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 17863509 - 17863466
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  17863509 tgatagcgaggtgcactttcagggacccaaatgagggtttactc 17863466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 40530585 - 40530534
Alignment:
Q  275 ggacaccacttgtataccattaagggaccaatgttatataacattgactaat 326  Q
    ||||||||||||| || |||| ||  ||||||||||||||||||||||||||    
T  40530585 ggacaccacttgtgtaacattgagataccaatgttatataacattgactaat 40530534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 3872304 - 3872346
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttact 191  Q
    |||||||||||  |||||||||||||||||| |||||||||||    
T  3872304 tgatagcgaggtgcactttcagggacccaaacgagggtttact 3872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 12888240 - 12888305
Alignment:
Q  127 tttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||  ||||| | | ||||||||||| ||| |||||||||| ||||||||| |||||||    
T  12888240 tttcttgatcttgggacgtgtctgatagcgaggtacaatttcagggactcaaatgaggatttactc 12888305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 35341536 - 35341709
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||| ||| | |||||||||| |||||||||||||||||||||| |||||||||||||  |    
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ct 35341634  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| |||||| | ||||| |||||    
T  35341635 tttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggtagataagtgttatcc 35341709  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 279 - 454
Target Start/End: Original strand, 48250153 - 48250329
Alignment:
Q  279 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 378  Q
    ||||||||| ||||||||||| ||||||| |||||| |||||   ||| |||||||||||| |||||||||||||||||| |||||||||||||||| |     
T  48250153 accacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat-tt 48250251  T
Q  379 ttttttaaagtgtgtgccaca--tggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    |||||||||| || ||| |||  || ||||   |||||||  |||| |||||| ||| ||||||||||||||||||||    
T  48250252 ttttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 48250329  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 7163971 - 7164047
Alignment:
Q  198 aacaccgtatgataaatagtgagatcatagatagtcaacacatggttgtatattataggagacacgaacacatttgt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  7163971 aacaccgtatgataaatagtgagatcatagatagtcaacacatagctgtatattattggagacacgaacacatttgt 7164047  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 311 - 454
Target Start/End: Original strand, 48072418 - 48072560
Alignment:
Q  311 tataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacacctt 410  Q
    |||| ||||||  ||| ||||||||||||||  |||||||| |||||||||  |||||||||| ||| |||||||||| ||||||||| |||||||   |    
T  48072418 tataccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat-ttttttaaagggtgtgccacgtggcacattct 48072516  T
Q  411 aattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||  |||| |||||| ||| ||||||||||||||||||||    
T  48072517 aattgggcaatggtatataccattatggtacacaagtgctatcc 48072560  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 455 - 539
Target Start/End: Original strand, 7164039 - 7164124
Alignment:
Q  455 cacatttgtttcccacataatgttaaacaaaaaatttctttaagg-nnnnnnnnttcatcttgatgaaattgaagaaacaagtgac 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  7164039 cacatttgtttcccacataatgttaaacaaaaaatttctttaaggaaaaaaaaattcatcttgatgaaattgaagaaacaagtgac 7164124  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 454
Target Start/End: Complemental strand, 32694677 - 32694568
Alignment:
Q  344 caatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacac 443  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| || ||||   ||||| |  |||| |||||| ||| || ||||||    
T  32694677 caatgttactttataaattctttatttgatatat-ttttttaaagggtgtgccacgtgacacattctaattaggcaatggtatataccattatagtacac 32694579  T
Q  444 aagtgctatcc 454  Q
    |||||||||||    
T  32694578 aagtgctatcc 32694568  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 38516693 - 38516620
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||| |||| |||||||||||||  | | ||||||||| | ||||||||||||||||||||||||||||||||    
T  38516693 tggttggattccttgatccagggatgtgtctgatagcgatgtacactttcagggacccaaatgagggtttactc 38516620  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 45291941 - 45292014
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    |||||||||| |||||| ||||||  |   ||||||||||| ||||||||||||||||||||||||||||||||    
T  45291941 tggttcgattccttgattcagggatgtgcctgatagcgaggtacactttcagggacccaaatgagggtttactc 45292014  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 40601840 - 40601882
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttact 191  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  40601840 tgatagcgaggcacactttcagggacccaaatgagggtttact 40601882  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 45296066 - 45296139
Alignment:
Q  119 tggttcgatttcttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    |||||||||| ||||||||| |||  |   ||||||||||| ||||||| ||||||||||||||||||||||||    
T  45296066 tggttcgattccttgatccatggatgtgcctgatagcgaggtacacttttagggacccaaatgagggtttactc 45296139  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 31306994 - 31306951
Alignment:
Q  330 agtgtgccacataccaatgttactttataaatgctttatttgat 373  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  31306994 agtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 40600754 - 40600709
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactcta 194  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||    
T  40600754 tgatagagaggcacattttcagggacccaaatgagggtttactcta 40600709  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 38517751 - 38517812
Alignment:
Q  131 ttgatccagggacttatttgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||||| | | ||||||||| | | ||||| |||||| |||||||||||||||||    
T  38517751 ttgatccagggacgtgtctgatagcgatgtatacttttagggactcaaatgagggtttactc 38517812  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 42537759 - 42537718
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttac 190  Q
    ||||||||||  |||||||||||||||||| |||||||||||    
T  42537759 tgatagcgagcaacactttcagggacccaactgagggtttac 42537718  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 40856478 - 40856534
Alignment:
Q  327 aagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttt 383  Q
    ||||||||| ||| ||||||||||| |||||| ||| |||||||||| ||| |||||    
T  40856478 aagagtgtgtcacctaccaatgttattttatagatgttttatttgatgtattttttt 40856534  T

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Target: scaffold0229 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 281 - 454
Target Start/End: Complemental strand, 13176 - 13003
Alignment:
Q  281 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 380  Q
    ||||||| ||||||||||| ||||||| |||||| ||||| ||||| || ||||||||| |  ||||||||||||||  |||||||||||||||||| ||    
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-tt 13078  T
Q  381 ttttaaagtg-tgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    |||||||| | |||||||| |||||||   |||| ||  |||| |||||| ||| ||||||||||||||||||||    
T  13077 ttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctatcc 13003  T

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Target: scaffold0032 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 34194 - 34365
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| ||||||||||| ||||||| ||||||  |||| | ||| |||||||||||| ||||||| |||||||||||||  |||||||||||||  |    
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata--t 34291  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||| ||||| ||| || ||||   ||||||| ||||||||||| || | ||||||||||| ||||||||    
T  34292 tttttaaagggtgtgtcacgtgacacattctaattggataatgttatat-accttatggtacacaaatgctatcc 34365  T

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Target: scaffold0519 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 11195 - 11367
Alignment:
Q  280 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 379  Q
    |||||||| |||||||||   ||||||| |||||| ||||||| | ||  ||| | |||| |||||||||||||||||||||| |||||||||||||       
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-ca 11292  T
Q  380 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 454  Q
    ||||||||| ||||||||| || ||||   ||| ||   |||| |||||| ||| ||||||||||| ||||||||    
T  11293 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11367  T

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Target: scaffold0263 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 23240 - 23168
Alignment:
Q  310 atataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtttt 382  Q
    ||||| ||||| | ||| |||||||||||| ||||||| |||||||||||||  |||||||||||||| ||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatatttttt 23168  T

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Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 6098 - 6141
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  6098 tgatagcgaggtacactttcagggactcaaatgagggtttactc 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 13838 - 13881
Alignment:
Q  149 tgatagcgagggacactttcagggacccaaatgagggtttactc 192  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  13838 tgatagcgaggtacactttcagggactcaaatgagggtttactc 13881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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