View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_16 (Length: 523)
Name: NF7665_low_16
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 31702606 - 31702108
Alignment:
| Q |
1 |
atcggttaacatatactcgatttctagctcattctctataacattatgttgagagaagaaaccagaatgagtcattattcgcatcaagcgatgaatgaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31702606 |
atcggttaacatatactcgatttctagctcattctcggtaacattatattgagagaagaaactagaatgagtcattattcgcatcaagcgatgaatgaag |
31702507 |
T |
|
| Q |
101 |
catgtttttgaagggtgaattggtagcaaagaaataagttttgagagtgatatgggtttgccataattgtatatgatatcaggtatgcctaaatcaacca |
200 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31702506 |
catgtttttgaagggtggattggtagcaaagaaataagttttgagagtgatatgggtttgccataattgtgtatgatatcaggtatgcctaaatcaacca |
31702407 |
T |
|
| Q |
201 |
cacatttaagtgacatggaatttatgaagttgaaaatgtgattccatatgtggctttgagctttgagcaaattggaagtaacattttcttcnnnnnnnng |
300 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31702406 |
cacatttaagggacatggaatttatgaagttgaaaatgtgattccatatgtggctttgagctttgagcaaattggaagtaacattttcttcatttttttg |
31702307 |
T |
|
| Q |
301 |
ggattccatacttgctaactgaannnnnnngggttgcaacctaacataatttaggtctatatatatggctagtagccggtatggaatgtcccatgcatga |
400 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31702306 |
ggattccatacttgctaactgaatttttttgggttgcaacctaacattatttaggtctatatatatggctagtagccggtatggaatgtcc----catga |
31702211 |
T |
|
| Q |
401 |
tcataattatcattgaattggattacagataagcagcgactataggctttgtatagtgtgccaaaattaaaattaaattatttgacacatagaatcttgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
31702210 |
tcataattatcattgaattggattacagataagcagcgactataggctttgtatagtgtgccaaaatt---attaaattatttgacacatacaatcttgt |
31702114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 31711036 - 31710763
Alignment:
| Q |
5 |
gttaacatatactcgatttctagctcattctctataacattatgttgagagaagaaaccagaatgagtcattattcgcatcaagcgatgaatgaagcatg |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| || | |||||||||||| || || |||||||| ||||||||||||||||||||| | |
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| T |
31711036 |
gttaacatatactcaatttctagctcattccctataacgtttttttgagagaagaagccggagtgagtcatgattcgcatcaagcgatgaatgccgtggt |
31710937 |
T |
|
| Q |
105 |
tttttgaagggtgaattggtagcaaagaaataagttttgagagtgatatgggtttgccataattgtatatgatatcaggtatgcctaaatcaaccacaca |
204 |
Q |
| |
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||||||||||||| |||| ||| ||||||| ||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||| ||||| ||||| |
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| T |
31710936 |
tttttgaagggtggattgatagtgaagaaatgagttttgagagtggtatgggtttgccatagttgtgtatgatatctggtatgcctaagtcaactacaca |
31710837 |
T |
|
| Q |
205 |
tttaagtgacatggaatttatgaagttgaaaatgtgattccatatgtggctttgagctttgagcaaattggaag |
278 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31710836 |
tttaagtgacatggaatttatgaagttaaacatgtgattccatacatggctttgagctttgagcaaattggaag |
31710763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 31714038 - 31713761
Alignment:
| Q |
1 |
atcggttaacatatactcgatttctagctcattctctataacattatgttgagagaagaaaccagaatgagtcattattcgcatcaagcgatgaatgaag |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||| |||| | ||||||| ||||| |||||||| ||| |||| ||||||| ||| || |
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| T |
31714038 |
atcggttagaatataatcgatttctagctcattctcagtaacatcgtgttcatagaagaagccagattgagtcatgatttgcattaagcgatagatgcag |
31713939 |
T |
|
| Q |
101 |
catgtttttgaagggtgaattggtagcaaagaaataagttttgagagtgatatgggtttgccataattgtatatgatatcaggtatgcctaaatcaacca |
200 |
Q |
| |
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|| ||||||||||||| |||||||| ||||||| |||||||| |||| |||||||||||||| |||| ||| ||||||||||| ||||| ||||| | |
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| T |
31713938 |
gatttttttgaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtataatatcaggtattcctaagtcaacta |
31713839 |
T |
|
| Q |
201 |
cacatttaagtgacatggaatttatgaagttgaaaatgtgattccatatgtggctttgagctttgagcaaattggaag |
278 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
31713838 |
cacacttaagtgacatggaatttatgaagttgcaaatatgattccatatgtggctttgagctttaagcaaagtggaag |
31713761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 5 - 323
Target Start/End: Complemental strand, 31734442 - 31734124
Alignment:
| Q |
5 |
gttaacatatactcgatttctagctcattctctataacattatgttgagagaagaaaccagaatgagtcattattcgcatcaagcgatgaatg-aagcat |
103 |
Q |
| |
|
|||||||||||||| |||||| |||||||| | || ||| |||||||||||||| ||||| |||||||| ||||||||||||||||| ||| ||| | |
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|
| T |
31734442 |
gttaacatatactcaatttctggctcattcgccgcaatattttgttgagagaagaagccagagtgagtcatgattcgcatcaagcgatggatgcaaggct |
31734343 |
T |
|
| Q |
104 |
gtttttgaagggtgaattggtagcaaagaaataagttttgagagtgatatgggtttgccataattgtatatgatatcaggtatgcctaaatcaaccacac |
203 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||| | |||||||| |||| |||| ||| ||||| ||||||||||| ||||| |||| |
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|
| T |
31734342 |
-tttttgaagggtggattggtagtgaagaaatgagttttgagataggcatgggtttcccatggttgtgtataatatctggtatgcctaagtcaactacac |
31734244 |
T |
|
| Q |
204 |
atttaagtgacatggaatttatgaagttgaaaatgtgattccatatgtggctttgagctttgagcaaattggaagtaacattttcttcnnnnnnnnggga |
303 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| ||||| |||| |
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| T |
31734243 |
atttaagcgacattgaatttatgaagttgaaaatgtgattccatacgtgactttgagccttgagcaaattggaagcaacattctcttcattattttggga |
31734144 |
T |
|
| Q |
304 |
ttccatacttgctaactgaa |
323 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
31734143 |
ttccatacttgctacctgaa |
31734124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 31684063 - 31683783
Alignment:
| Q |
5 |
gttaacatatactcgatttctagctcattctctataacattatgttgagagaagaaaccagaatgagtcattattcgcatcaagcgatgaatgaagcatg |
104 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| ||| ||| ||||||||||||| ||||||| ||||| ||||| ||||||||||| | | |||| | |
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|
| T |
31684063 |
gttaacatgtactcaatctctagctcattctcagtaatattttgttgagagaagatgccagaatacgtcatgattcgtatcaagcgatggaagtagcaag |
31683964 |
T |
|
| Q |
105 |
tttttgaagggtgaattggtagcaaagaaataagttttgagagtgatatgggtttgccataattgtatatgatatcaggtatgcctaaatcaaccacaca |
204 |
Q |
| |
|
|||||| ||||| ||||| || || ||| |||||||||||||| || ||| | |||||||||| ||||||||| ||||||||||| || || ||||| |
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|
| T |
31683963 |
tttttgtagggttgattggaagtgaactaatgagttttgagagtgacataggtctaccataattgtgtatgatatctggtatgcctaagtcgactacaca |
31683864 |
T |
|
| Q |
205 |
tttaagtgacatggaatttatgaagttgaaaatgtgattccatatgtggctttgagctttgagcaaattggaagtaacatt |
285 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
31683863 |
tttaagagacatggaatttatgaagttgaaaatgtgtttccatatgtggctttgagctttgagcaaatttgaagcaacatt |
31683783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 30569978 - 30569805
Alignment:
| Q |
55 |
gaagaaaccagaatgagtcattattcgcatcaagcgatgaatgaagcatgtttttgaagggtgaattggtagcaaagaaataagttttgagagtgatatg |
154 |
Q |
| |
|
||||||||||||||| || | | ||||||||| ||||| ||| | ||||| |||||||| ||||||| ||||||||| ||||||||||||| || |
|
|
| T |
30569978 |
gaagaaaccagaatgtgttaaaactcgcatcaaacgatgtatgtcaccggttttggaagggtggattggtaacaaagaaatgagttttgagagtgggatt |
30569879 |
T |
|
| Q |
155 |
ggtttgccataattgtatatgatatcaggtatgcctaaatcaaccacacatttaagtgacatggaatttatgaa |
228 |
Q |
| |
|
|||| |||||| |||| ||| | ||| ||||| | || |||| |||||||||| ||||| || |||||||| |
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|
| T |
30569878 |
ggttggccatagttgtgtataacatctggtatacacaattcaattgcacatttaagggacattgagtttatgaa |
30569805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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