View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_21 (Length: 470)
Name: NF7665_low_21
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 73 - 460
Target Start/End: Original strand, 39209354 - 39209737
Alignment:
| Q |
73 |
atcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgtac |
172 |
Q |
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| T |
39209354 |
atcatttttaactgcagttcgccgggcgggaaaaatttaatttatgaatttttgggacaaaattacgttggtacccttatgttgtaaaacatgcatgtac |
39209453 |
T |
|
| Q |
173 |
catacattgctcgccatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgc |
272 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39209454 |
catacattgctcgcaatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcataggtgatgatgataactccacattggacggtgc |
39209553 |
T |
|
| Q |
273 |
acacacactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
372 |
Q |
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| T |
39209554 |
atac----tgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
39209649 |
T |
|
| Q |
373 |
tccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
460 |
Q |
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| T |
39209650 |
tccctcacactgttttccccttctttatcgtccttcccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
39209737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 27514578 - 27514129
Alignment:
| Q |
19 |
tataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaaatttatttatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| || ||| ||| |
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| T |
27514578 |
tataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttcaactgcagttaatcgggcgggaaaaatttaattaatg |
27514479 |
T |
|
| Q |
119 |
aatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgt-accatacattgctcgccatgttggaggatggaaatttcaaacctggt |
217 |
Q |
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| T |
27514478 |
agtttttgggacaaaattacgtttatacccttatgttgtaaaacttgcatgtaaccatacattgctcgccatgttggagaatggaaatttcaaacctgct |
27514379 |
T |
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| Q |
218 |
gcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgcacacacactgcacaagagg-tgaccaattgatgcaagcttctctt |
316 |
Q |
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| T |
27514378 |
gcatcacgttgtttatgctcaggggtcatgatgataactccacattggacggtg----cacactgcacaagaggttgaccaattgctgcaagcttctctt |
27514283 |
T |
|
| Q |
317 |
ttcttcctttccttctatacaagagaaacaatcaccaccaacataa----------aggtgtcttctccctcacactgttttccccttctttatcgtcct |
406 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514282 |
ttcttcctttccttctatacaagagaaacaatcatcaccaacataaatccaaacctaagtgtcttctccctcacactgttttccccttctttatcgtcct |
27514183 |
T |
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| Q |
407 |
ttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
460 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
27514182 |
ttccctcacctccttctccttgccaccatccgatcttcttctctttgttctctg |
27514129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 23016965 - 23017092
Alignment:
| Q |
25 |
tggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttt |
124 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||| |||| |||| |
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| T |
23016965 |
tggaacacaaacctgcaagttttccctaatttaatcctttgaaaatccatcattttcaactgcagttcatcgggcgggaaaaatttaattaatgagtttt |
23017064 |
T |
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| Q |
125 |
tgggacaaaattacgttgatacccttat |
152 |
Q |
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| T |
23017065 |
tgggacaaaattacatttatacccttat |
23017092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 36407064 - 36407015
Alignment:
| Q |
19 |
tataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
68 |
Q |
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| T |
36407064 |
tataaatggaacaccaagctgcaaatttgccctaatttgttcctttgaaa |
36407015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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