View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_22 (Length: 449)
Name: NF7665_low_22
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 15441252 - 15441670
Alignment:
| Q |
16 |
tctgatccaatctggaggtaataaatttgttcttttcgtgacttctattacattatttcggaattaatgtaacttttatagctgctcctgtgaaatcatt |
115 |
Q |
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| T |
15441252 |
tctgatccaatctggaggtaagaaatttgttctttttgtgacttctattacattatttcggaattaatgtaacttttatagctgctcctgtgaaatcatt |
15441351 |
T |
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| Q |
116 |
gtctgaagttgaattttgtggataataggggaagtttgctggttctcaacaaaagctttgacaaaatcatcactggattattgtgccacttgtccacttt |
215 |
Q |
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| T |
15441352 |
gtctgaagttgaattttgtggataataggggaagtttgctggttctcaacaaaagctttgacaaaatcatcactggattattgtgccacttgtccacttt |
15441451 |
T |
|
| Q |
216 |
agcatgtcctaaagttctcgaggaaacaaaacatctacctaatgtgcttcatgcagacatgattcaaagagaagctgtgtggccagagcgtttctggaaa |
315 |
Q |
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| T |
15441452 |
agcatgtcctaaagttctcgaggaaacaaaacatctacctaatgtgcttgatgcagacatgattcaaagagaagctgtgtggccaaagagtttctggaaa |
15441551 |
T |
|
| Q |
316 |
tttggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaacatgcatgattcgataaacatt |
415 |
Q |
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| T |
15441552 |
tttggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacgttttgcacaaacttaacaacatgcatgattcgataaacatt |
15441651 |
T |
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| Q |
416 |
tctgttttatatcatttct |
434 |
Q |
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| T |
15441652 |
tctgttttatattatttct |
15441670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 205 - 397
Target Start/End: Complemental strand, 11788436 - 11788244
Alignment:
| Q |
205 |
ttgtccactttagcatgtcctaaagttctcgaggaaacaaaacatctacctaatgtgcttcatgcagacatgattcaaagagaagctgtgtggccagagc |
304 |
Q |
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| T |
11788436 |
ttgtccacattagcatgccctaaagtacttgaagaggcaagacatatccctgatgtgctatatggtgaattgcttcaaagatcagctgtgtggccagaga |
11788337 |
T |
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| Q |
305 |
gtttctggaaatttggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaacatg |
397 |
Q |
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| T |
11788336 |
gtttcaagaaatttggaacaaataatatgagcatcggcctttatttctttcctcagaatgaaaggtgacattttacgcaaacttgagaacatg |
11788244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 192 - 416
Target Start/End: Complemental strand, 15281367 - 15281143
Alignment:
| Q |
192 |
attattgtgccacttgtccactttagcatgtcctaaagttctcgaggaaacaaaacatctacctaatgtgcttcatgcagacatgattcaaagagaagct |
291 |
Q |
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| T |
15281367 |
attaatgtgtcatttgtcgacttcagcatgccgtaaagttcatgagaagacaagccaactccctgatgtgcttaatgcagacttgctagaaagatcaact |
15281268 |
T |
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| Q |
292 |
gtgtggccagagcgtttctggaaatttggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaag |
391 |
Q |
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| T |
15281267 |
gtcttgccagagagtttcaggagatgtggaacaagtaatcacagcattgacctctatttctttcctcaagatgaaaggtgatattttgcacaaacttaag |
15281168 |
T |
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| Q |
392 |
aacatgcatgattcgataaacattt |
416 |
Q |
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||| ||| ||||| |||||| |||| |
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| T |
15281167 |
aacttgcttgatttgataaatattt |
15281143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 11779178 - 11779136
Alignment:
| Q |
328 |
aatctaagcattggcctttatttcttccctcagaatgaaaggt |
370 |
Q |
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| T |
11779178 |
aatctcagcattggcctttatttctttcctcggaatgaaaggt |
11779136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 501370 - 501307
Alignment:
| Q |
334 |
agcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaacatg |
397 |
Q |
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| T |
501370 |
agcattggcctttatttctttcctcacaatgaaaggtgacattttgcacaaacttgagaacatg |
501307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 43721309 - 43721384
Alignment:
| Q |
318 |
tggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaa |
393 |
Q |
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|||||| ||||||| | ||||||||| |||||| | ||||| ||||||||||| ||||||||||||||| |||| |
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| T |
43721309 |
tggaacaaataatcacaacattggcctctatttcattcctcaagatgaaaggtgatattttgcacaaacttgagaa |
43721384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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