View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_23 (Length: 448)
Name: NF7665_low_23
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 151 - 430
Target Start/End: Complemental strand, 6710307 - 6710028
Alignment:
| Q |
151 |
ttataaggtaaaaactactcgaccacggcacaccaatcgcagtaaaatatgtaaagcacagaactcaaacaacagaaatctttataagcaaataagccct |
250 |
Q |
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| T |
6710307 |
ttataaggtaaaaactactcgaccacggcacaccaatcgcagtaaaatatgtaaagcacagaactcaaacaacagaaatctttataagcaaataagccct |
6710208 |
T |
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| Q |
251 |
taccttggagtatccaaaatcacagatcttcaaatgaagtgctggatctccatccaacaaagtgttttccaacttcagatcccgatgacacacttgcttc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6710207 |
taccttggagtatccaaaatcacagatcttcaaatgaagtgctggatctccatccaacaaagtgttttccaacttcagatcccgatgacatacttgcttc |
6710108 |
T |
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| Q |
351 |
atgaggagacaaattatacataagattgatgcatcagacataatactaataaaattggtacattagtacattaactatac |
430 |
Q |
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| T |
6710107 |
atgaggagacaaattatacataagattgatgcatcagacataatactaataaaattggtacattagtacattaactatac |
6710028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6710460 - 6710333
Alignment:
| Q |
1 |
agaaataaaaggaattcataagaaaagtaaagaacgacaatcagatgaaaaaagtaatttggaggaatactagtttttaaggagcctgaatagttgtcac |
100 |
Q |
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| T |
6710460 |
agaaataaaaggaattcataagaaaagtaaagagcgacaatcagatgaaaaaagtaatttggaggaatactagtttttaaggagcctgaatagttgtcac |
6710361 |
T |
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| Q |
101 |
aattcacaaaggtgcaataacattcgtg |
128 |
Q |
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| T |
6710360 |
aattcacaaaggtgcaataacattcgtg |
6710333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 395
Target Start/End: Original strand, 34128876 - 34129026
Alignment:
| Q |
250 |
ttaccttggagtatccaaaatcacagatcttcaaatgaagtgctggatctccatccaacaaagtgttttccaacttcagatcccgatgacacacttgctt |
349 |
Q |
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||||||||||||| ||||||||||| ||||||| || | | || ||||||||||||||| |||||||| ||||| ||||| ||||| |||||||| |
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| T |
34128876 |
ttaccttggagtaaccaaaatcacatatcttcagtcgaggagtcgggcttccatccaacaaagtattttccaatttcaggtcccggtgacatacttgctt |
34128975 |
T |
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| Q |
350 |
catgaggagacaaattatacataagat-----tgatgcatcagacataata |
395 |
Q |
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||||| |||||| |||| ||||||||| ||||||||||| ||||||| |
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| T |
34128976 |
catgaagagacacattacacataagataagactgatgcatcaggcataata |
34129026 |
T |
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