View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_24 (Length: 435)
Name: NF7665_low_24
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 38010143 - 38009742
Alignment:
| Q |
16 |
atacaatacgagatgcataatcttcacaaacatgctgaaattcaacttatgattcaagtagtttactatacaaaacaaactaagttgccatttttaaaaa |
115 |
Q |
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|||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38010143 |
atacaacatgagatgcataatcttcacaaccatgctgaaattcaacttatgattcaagtagtttactatacaaaacaaactaagttgccattttaaaaaa |
38010044 |
T |
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| Q |
116 |
cttacctttgttctgcccagctctccagagttgtccaacctttggcaatgtagagaatgatgtaactccagtaagattgattagaattttaatacaatcc |
215 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
38010043 |
cttacctttgttctgcccagctttccagagtcgtccaacctttggcaatgtagagaatgatgtaactccagtaagattggttataattttaatacaatcc |
38009944 |
T |
|
| Q |
216 |
aagcactgtaaatatacgaatgaggttgtaattattcaaccatgataatgtcaaataagaattaatgatatactatcaaaaacacaccttgatggccaaa |
315 |
Q |
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| T |
38009943 |
aagcactgtaaatatacgaatgatgttgtaattattcaaccatgataatgtcaaataagaactaatgatatactgttaaaaacacaccttgatggccaaa |
38009844 |
T |
|
| Q |
316 |
tcttgagtcagacatataataagagcctcaggagaatatacagcatgatctatggtatttaggggaagcaagaaccatacacgttgtcttcccagctcct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
38009843 |
tcttgagtcagacatataataagagcctcaggagaatatacaacatgatctatggtattta-gggaagcaagaaccatacacgttgtcttctcagctcct |
38009745 |
T |
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| Q |
416 |
atg |
418 |
Q |
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| T |
38009744 |
atg |
38009742 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 20003640 - 20003741
Alignment:
| Q |
40 |
cacaaacatgctgaaattcaacttatgattcaagtagtttactatacaaaacaaactaagttgccatttttaaaaacttacctttgttctgcccagctct |
139 |
Q |
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||||||||||||||| ||||||| |||||||||| ||||||| ||||||||| || ||| | ||||||||||||||| |||||| |||||| || | |
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| T |
20003640 |
cacaaacatgctgaatttcaact-atgattcaagaagtttaccatacaaaactaagtaa----caatttttaaaaacttatctttgtcgtgcccacctat |
20003734 |
T |
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| Q |
140 |
ccagagt |
146 |
Q |
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||||||| |
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| T |
20003735 |
ccagagt |
20003741 |
T |
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