View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_26 (Length: 388)
Name: NF7665_low_26
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 33175340 - 33174995
Alignment:
| Q |
1 |
agcacttaagattgaactagcacctcaagtttgaatnnnnnnngtggttttttgataattgatttacaaaaacaataatttttattataataatcataaa |
100 |
Q |
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| T |
33175340 |
agcacttaagattgaactagcacctcaagtttgaataaaaaa-gtggttttttgataattgatttacaaaaacaataatttttattataataatcataaa |
33175242 |
T |
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| Q |
101 |
gaaaaagctttagttttttaatttataatatgtaacatacagaccctttagaatgatgattattttgtgcttgcttatatattatcacttaatcctcttc |
200 |
Q |
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| T |
33175241 |
gaaaaagctttagttttttaatttataatatgtaacacacagaccctt-agaatgatgattattttgtgcttgcttatatattatcacttaatcctcttc |
33175143 |
T |
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| Q |
201 |
taagctaacaaagtttgtagcccgtttggatcattataaaaacttaggaaattaagataaaagtaatgagacattgagatgtatattgctaagaattggt |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33175142 |
taagctaacaaaatttgtagcccgtttggatcattataaaaacttaggaaattaagataaaagtaatgagacattgagatgtatattgctaagaattggt |
33175043 |
T |
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| Q |
301 |
gatcttttgctcgaaaagataatttgtgatgttttggggaaaatttct |
348 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33175042 |
gatgttttgctcgaaaagataatttgtgatgttttggggaaaatttct |
33174995 |
T |
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