View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_29 (Length: 370)
Name: NF7665_low_29
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 52799637 - 52799991
Alignment:
| Q |
1 |
tttcagcgcgaccatctttgaccaagaacgagagggaaaacatgttttcaattgtctgagcaaaagaaaatctgttcaaaatgaggtgttcaagttggac |
100 |
Q |
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| T |
52799637 |
tttcagcgcgaccatctttgaccaagaatgagagggcaaacaggttttcaactgtctgagcaaaagaaaatctgttcaaaatgaggtgttcaagttggac |
52799736 |
T |
|
| Q |
101 |
cnnnnnnnnnnnnnnnncgcttaatatgttgaacatggttgacatgtttttgtcagtatcagttttttcctctccctcagtatcttggagctgtttgaaa |
200 |
Q |
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| T |
52799737 |
ctttttgtttt------cccttaatatgttgaacatggttgacatgtttttgtcagtatcagttttttcctctccctcagtatcttggagctgtttgaaa |
52799830 |
T |
|
| Q |
201 |
gaaacaataagtagccttaaataaataacaaagacgttgattccaaatatgttttgaaattggatcaaccaacaaacaaaacaggtac-----tatgatg |
295 |
Q |
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||||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
52799831 |
gaaacaataagtagc----attaaataacaaagaagttgattctaaatatgttttgaaattggatcaaccaacaaagaaaacaggtactatgatatgatg |
52799926 |
T |
|
| Q |
296 |
ttgaagattgaaaaaacaaagtgcacaatatgtaagcaaaaggcttcatttcattgacattgaca |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52799927 |
ttgaagattgaaaaaacaaagtgcacaatatgtaagcaaaaggcttgatttcattgacattgaca |
52799991 |
T |
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