View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_30 (Length: 368)
Name: NF7665_low_30
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45386139 - 45385990
Alignment:
| Q |
1 |
tggagtaatgtaataatgaaattgattggcaggagtggaatgggtggaagctaagctgaagaactctgagttaagcgtgaagggagtgtatgattcagca |
100 |
Q |
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| T |
45386139 |
tggagtaatgtaataatgaaattgattggcaggagtggaatgggtggaagctaatctgaagaactctgaggtaagcgtgaagggagtgtatgattcagca |
45386040 |
T |
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| Q |
101 |
atgttggttgaatatgtgtacaagagaattgggaagcatgcagtgattgt |
150 |
Q |
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| T |
45386039 |
atgttggttgaatacatgtacaagagaattgggaagcatgcagtgattgt |
45385990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 45390271 - 45390144
Alignment:
| Q |
20 |
aattgattggcaggagtggaatgggtggaagctaagctgaagaactctgagttaagcgtgaagggagtgtatgattcagcaatgttggttgaatatgtgt |
119 |
Q |
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| T |
45390271 |
aattgattggcaggagtggaattggtggaaactgatctgaagaactccgaggtaagtgtgaagggggtgtatgatccagcaatgttggttgaatatgtgt |
45390172 |
T |
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| Q |
120 |
acaagagaattgggaagcatgcagtgat |
147 |
Q |
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| T |
45390171 |
acaagagaattgggaagcatgcagtgat |
45390144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 45385898 - 45385828
Alignment:
| Q |
242 |
actaagttggaggaggagatgnnnnnnnntgaacactactttaatccaccaatcaatatgtatgcataccc |
312 |
Q |
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| T |
45385898 |
actaagttggaggaggagatgaaaaaaaatgaacactactttaatccaccaatcaatatgtatgcataccc |
45385828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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