View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_31 (Length: 366)
Name: NF7665_low_31
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_31 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 1959963 - 1959607
Alignment:
| Q |
10 |
aagaatatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaag |
109 |
Q |
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| T |
1959963 |
aagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaag |
1959864 |
T |
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| Q |
110 |
tatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgat |
209 |
Q |
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| T |
1959863 |
tatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgat |
1959764 |
T |
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| Q |
210 |
acacacaacaaaggtggtttaacatgtatacaatataattaaaataactttgtagcattccatcaagtaagaggacagcagtgattaagattatagggat |
309 |
Q |
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| T |
1959763 |
acacacaacaaaggtggtttaacatgtatacaatataattcaaataactttgtagcattccatcaagtaagaggacagcagtgattaagattatagggat |
1959664 |
T |
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| Q |
310 |
acaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgat |
366 |
Q |
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| T |
1959663 |
acaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgat |
1959607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 2023362 - 2023612
Alignment:
| Q |
10 |
aagaatatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaag |
109 |
Q |
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| T |
2023362 |
aagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaag |
2023461 |
T |
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| Q |
110 |
tatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgat |
209 |
Q |
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| T |
2023462 |
tatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcctttgccatatttcaagattggaaatttctgat |
2023561 |
T |
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| Q |
210 |
acacacaacaaaggtggtttaacatgtatacaatataattaaaataacttt |
260 |
Q |
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| T |
2023562 |
acacacaataaaggtggtttaacatgtatgcaatataattaaaataacttt |
2023612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 266 - 356
Target Start/End: Original strand, 2023807 - 2023897
Alignment:
| Q |
266 |
attccatcaagtaagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgt |
356 |
Q |
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| T |
2023807 |
attccatcaagtcagaggacagcaacaattaagattatagggatacaaacctattttcttgaggactacaagaaccttgtgaacatcatgt |
2023897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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