View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7665_low_34 (Length: 360)
Name: NF7665_low_34
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 38950546 - 38950886
Alignment:
| Q |
7 |
tccaataatataacttgaaaacattgcttaaactatccgagtgaatggacgctgtccaaaacacatttatttacaatatctactgtaagtgtgcaaaatt |
106 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950546 |
tccaatcaaataacttgaaaacattgcttaaactatccgagtgaatggacgctgtccaaaacacgtttatttacaatatctactgtaagtgtgcaaaatt |
38950645 |
T |
|
| Q |
107 |
catataaattacattaaatttatctgagacttacataaagtagctggtgtgactcattcatggttttattatatgcaaactattttttaatatatgtaag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950646 |
catataaattacattaaatttatctgagacttacataaagtagctggtgtggctcattcatggttttattatatgcaaactattttttaatatatgtaag |
38950745 |
T |
|
| Q |
207 |
aaaaacttaaacaataatcatttaaaaataaaactacaggagtaattttgttacagaggtaagtataattatataaatatctttgtaagtgttctttaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38950746 |
aaaaacttaaacaataatcatttaaaaataaaactacaggagtaattttgttacagaggtaagtataattatataaatatctttgtaagtgttttttaaa |
38950845 |
T |
|
| Q |
307 |
ttcgaagattttctcta-cctagattggagcacattctttg |
346 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
38950846 |
ttcgaagattttctctatcttagattggagcacattctttg |
38950886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University