View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_36 (Length: 358)
Name: NF7665_low_36
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 3243162 - 3243498
Alignment:
| Q |
1 |
aaaagggaacgagaacaactctggttacttgtcattatcaattctttcggttgttgctgatattactgatttttctaaatactggaaaagatatgtaaat |
100 |
Q |
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| T |
3243162 |
aaaagggaacgagaacaactctggttacttgtcattatcaattctttcggttgttgctgatattactgatttttctaaagactggaaaagatatgtaaat |
3243261 |
T |
|
| Q |
101 |
cttgagttggctcttactaatcaagccaatgccttgctcacaattgtcaaaggtatgtttcatattaacaattgcttttacattttttggtacaaggcac |
200 |
Q |
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| T |
3243262 |
cttgagttggctcttactaatcaagccaatgccttgctcacaattgtcaaaggtatgtttcatattaacaattgcttttacattttttggtacaaggcac |
3243361 |
T |
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| Q |
201 |
catgacatctgttaattatatcaatagttgttttgtgatgaactttcctttattttgtggttgagcatgtcaatgaattcatatccgatacattcattat |
300 |
Q |
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| T |
3243362 |
catgacatctgttaattatatcaatagttgttttgtgatgaactttcctttattttgtggttgagcatgtgaatgaattcatatgcgatacattcatttt |
3243461 |
T |
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| Q |
301 |
ttttccctttatataagttgtttttaaccgaacacga |
337 |
Q |
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| T |
3243462 |
tttcccctttatacaagttgtttttaaccgaacacga |
3243498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 3239109 - 3239204
Alignment:
| Q |
92 |
tatgtaaatcttgagttggctcttactaatcaagccaatgccttgctcacaattgtcaaaggtatgtttcatattaacaattgcttttacattttt |
187 |
Q |
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| T |
3239109 |
tatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttcataataacaattagttttacattttt |
3239204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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