View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_4 (Length: 958)
Name: NF7665_low_4
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 843; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 16 - 944
Target Start/End: Complemental strand, 5231776 - 5230850
Alignment:
| Q |
16 |
ccaatcaaatgtagtctccacgggagtcatccttttatggaagctatgtccattaacctgcatgacattggtaaaattttataaatgttcacacttcgaa |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5231776 |
ccaatcaaatgtagtctccacgggagtcatccttttatggaagctatgtccattaacctacatgacattggtaaaattttataaatgttcacacttcgaa |
5231677 |
T |
|
| Q |
116 |
aaacatctaacgtggtaaatacaaacttatttaacatattctattatcttgtgttaccgttgccgtgttgaaaactacagttttgcaatcaggaagaatg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231676 |
aaacatctaacgtggtaaatacaaacttatttaacatattctattatcttgtgttaccgttgccgtgttgaaaactacagttttgcaatcaggaagaatg |
5231577 |
T |
|
| Q |
216 |
ctgacagaccaaggtggtagatcatattggccatttccaaatgtaaccgctgccgcagattttgtgtcatagtttgcaaggaatgcagcacagacactgg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | ||||| |
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| T |
5231576 |
ctgacagaccaaggtggtagatcatattggccatttccaaatgtaaccgttgccgcagattttgtgtcgtagtttgcaaggaatgcagcacaaatactgg |
5231477 |
T |
|
| Q |
316 |
tatttacgtagtacacatgcgcctaagattacattaacnnnnnnnnnnnttaaactaagcttcaataaagtaacaattttggaccataatcttatcatga |
415 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231476 |
tatttacgtagtacacatgtgcctaagattacattaacaaaaaaaaa--tcaaactaagcttcaataaagtaacaattttggaccataatcttatcatga |
5231379 |
T |
|
| Q |
416 |
actaagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231378 |
actaagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatg |
5231279 |
T |
|
| Q |
516 |
taaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggttgtaactcaaaccatga |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
5231278 |
taaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggttataactcaaaccatga |
5231179 |
T |
|
| Q |
616 |
aacaatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagt |
715 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5231178 |
aacaatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttctaccaaaattagt |
5231079 |
T |
|
| Q |
716 |
tcctccatggtactacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatcagatcttagaagtattcacacagga |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5231078 |
tcctccatggtactacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatgagatcttagaagtattcacacagga |
5230979 |
T |
|
| Q |
816 |
ttaatcaaatgtaattaagtcatcatattcatataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtct |
915 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5230978 |
ttaatcaaatttaattaagtcatcatattcatataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtct |
5230879 |
T |
|
| Q |
916 |
tcagttggtctatgagatatagcaccacc |
944 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
5230878 |
tcagttggtctatgagatatagcaccacc |
5230850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 638 - 676
Target Start/End: Complemental strand, 7346105 - 7346067
Alignment:
| Q |
638 |
accatattcatcaataggagcatcataatcatagcttgt |
676 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
7346105 |
accatattcatcaattggagcatcatagtcatagcttgt |
7346067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 162 - 308
Target Start/End: Complemental strand, 17127183 - 17127037
Alignment:
| Q |
162 |
tcttgtgttaccgttgccgtgttgaaaactacagttttgcaatcaggaagaatgctgacagaccaaggtggtagatcatattggccatttccaaatgtaa |
261 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||||||||| ||||||||||| |||| ||||||||| ||||| || || |||||||||||||||| || |
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| T |
17127183 |
tcttgtgttacctttgcagtgttgaaaacctcagttttgcagtcaggaagaatactgatagaccaagggggtaggtcgtagtggccatttccaaatgcaa |
17127084 |
T |
|
| Q |
262 |
ccgctgccgcagattttgtgtcatagtttgcaaggaatgcagcacag |
308 |
Q |
| |
|
| |||| ||| ||||| |||||||||||||||||||||||| |
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| T |
17127083 |
cttttgcccacgatccagtgtcgtagtttgcaaggaatgcagcacag |
17127037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 634 - 729
Target Start/End: Complemental strand, 17126716 - 17126621
Alignment:
| Q |
634 |
gcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
729 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| |
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| T |
17126716 |
gcataccatattcatcgataggagcatcataatcgtaactcgtggcaatgaaaaggccagaagatgttcttccaaaattagttcctccatggtact |
17126621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 637 - 729
Target Start/End: Original strand, 42988695 - 42988787
Alignment:
| Q |
637 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
729 |
Q |
| |
|
||||||||||||||| ||| |||||||| ||||||||||| ||||| ||| |||||| || ||||| ||||||||| ||||||||||| |||| |
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| T |
42988695 |
taccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatttgttcctccatgatact |
42988787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 848 - 928
Target Start/End: Complemental strand, 17126529 - 17126449
Alignment:
| Q |
848 |
ataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttggtctat |
928 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||| |||| |||||| ||||| ||| ||||||||||||| | |||||||| |
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|
| T |
17126529 |
ataccatatagtagttaacatatgagccgcgattctgtacgaatctggcaaccgagaatgccaagtcttctgctggtctat |
17126449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 428 - 563
Target Start/End: Complemental strand, 17126925 - 17126793
Alignment:
| Q |
428 |
actttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaa |
527 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||| ||||| ||||| | ||||||| ||| ||||| ||||||||||||||||||| | | | |
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| T |
17126925 |
actttacctcaaggttttt---tccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttag |
17126829 |
T |
|
| Q |
528 |
atggctccattttggttcatttggaagtcctaatat |
563 |
Q |
| |
|
||| | ||||||||||||| || ||||||| |||| |
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|
| T |
17126828 |
atgcccccattttggttcacttataagtcctgatat |
17126793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 635 - 729
Target Start/End: Complemental strand, 5452968 - 5452874
Alignment:
| Q |
635 |
cataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
729 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| ||||| |||| |
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|
| T |
5452968 |
cataccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccaccagcggttcttccaaaatttgttccaccatgatact |
5452874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 180 - 312
Target Start/End: Original strand, 52548301 - 52548433
Alignment:
| Q |
180 |
gtgttgaaaactacagttttgcaatcaggaagaatgctgacagaccaaggtggtagatcatattggccatttccaaatgtaaccgctgccgcagattttg |
279 |
Q |
| |
|
|||||||||| | |||||||||| | |||||||||||| | ||||||||| ||||| |||| ||| ||| |||| || |||||| ||||||| | | | |
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|
| T |
52548301 |
gtgttgaaaattgcagttttgcagttaggaagaatgctaatagaccaaggaggtagttcatgttgtgcatctccatatttaaccgttgccgcatttctgg |
52548400 |
T |
|
| Q |
280 |
tgtcatagtttgcaaggaatgcagcacagacac |
312 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||| |
|
|
| T |
52548401 |
tgtcataatttgcaaggaaggcagcacaaacac |
52548433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 633 - 730
Target Start/End: Original strand, 22014418 - 22014515
Alignment:
| Q |
633 |
tgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
730 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||| || || | ||| ||| | |||| | |||||||||||| ||||| |||||||||||||| |
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| T |
22014418 |
tgcataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtacta |
22014515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 637 - 730
Target Start/End: Complemental strand, 52647440 - 52647347
Alignment:
| Q |
637 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
730 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | ||| || |||| | || || ||| |||||||| ||||||||||||||||| |
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|
| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtacta |
52647347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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