View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7665_low_41 (Length: 326)

Name: NF7665_low_41
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7665_low_41
NF7665_low_41
[»] chr1 (5 HSPs)
chr1 (85-313)||(44945899-44946127)
chr1 (1-84)||(8090041-8090124)
chr1 (1-86)||(48907299-48907384)
chr1 (1-84)||(27962617-27962700)
chr1 (1-67)||(172877-172943)
[»] chr2 (8 HSPs)
chr2 (1-85)||(30246525-30246609)
chr2 (1-84)||(14684623-14684706)
chr2 (1-84)||(14685684-14685767)
chr2 (1-84)||(21306479-21306562)
chr2 (1-84)||(21307536-21307619)
chr2 (1-86)||(40422506-40422591)
chr2 (1-84)||(4517243-4517326)
chr2 (1-84)||(40421447-40421530)
[»] chr7 (2 HSPs)
chr7 (1-84)||(13077597-13077680)
chr7 (1-86)||(13078658-13078743)
[»] chr3 (4 HSPs)
chr3 (1-84)||(39983743-39983826)
chr3 (1-84)||(39984804-39984887)
chr3 (1-84)||(41968188-41968270)
chr3 (1-80)||(14414263-14414340)
[»] chr8 (3 HSPs)
chr8 (1-85)||(45036162-45036246)
chr8 (1-89)||(6540571-6540659)
chr8 (1-84)||(13255632-13255714)
[»] chr4 (2 HSPs)
chr4 (1-84)||(54937788-54937871)
chr4 (1-84)||(54938829-54938912)
[»] chr6 (1 HSPs)
chr6 (1-79)||(28889748-28889826)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 85 - 313
Target Start/End: Original strand, 44945899 - 44946127
Alignment:
Q  85 gacacacaccaaacaaagtcgaaaaagaaaaggtacatgaatttcgaaaggcttacttacttgtggataaagacagatgcattagaccacaagaaaagag 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44945899 gacacacaccaaacaaagtcgaaaaagaaaaggtacatgaatttcgaaaggcttacttacttgtggataaagacagatgcattagaccacaagaaaagag 44945998  T
Q  185 cagcaagagccaaaatcattaaatggcaaacaagagttatgaggttgtattgcatcaactcaaagaaaacccacaaggcagtgccagcaccaagtgcaat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44945999 cagcaagagccaaaatcattaaatggcaaacaagagttatgaggttgtattgcatcaactcaaagaaaacccacaaggcagtgccagcaccaagtgcaat 44946098  T
Q  285 tgctgtgcatttcttgttcctccatagta 313  Q
    |||||||||||||||||||||||||||||    
T  44946099 tgctgtgcatttcttgttcctccatagta 44946127  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8090124 - 8090041
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8090124 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 8090041  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48907384 - 48907299
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcaga 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48907384 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcaattgatttctatcaga 48907299  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 27962700 - 27962617
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27962700 cagacccttgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttggtttctatca 27962617  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 172943 - 172877
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctata 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172943 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctata 172877  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 30246525 - 30246609
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcag 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30246525 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcag 30246609  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14684623 - 14684706
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14684623 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 14684706  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14685684 - 14685767
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14685684 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 14685767  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21306479 - 21306562
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21306479 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 21306562  T

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Target: chr2; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21307536 - 21307619
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21307536 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 21307619  T

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Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 40422506 - 40422591
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcaga 86  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40422506 cagacccttgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcaga 40422591  T

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Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4517326 - 4517243
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4517326 cagaccctcgatgttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 4517243  T

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Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 40421447 - 40421530
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40421447 cagaccctcgaagttctgcaatattactctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 40421530  T

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Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13077597 - 13077680
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077597 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 13077680  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 13078658 - 13078743
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcaga 86  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13078658 cagaccctcgaagttctgcaatattattccgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcaga 13078743  T

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Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39983826 - 39983743
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39983826 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 39983743  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39984887 - 39984804
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984887 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 39984804  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 41968270 - 41968188
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41968270 cagaccctcgaagttctgcaatattat-ctgtaatcaaagggattttccctattttattcttctatatcagttggtttctatca 41968188  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 14414263 - 14414340
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttct 80  Q
    |||||||| |||||||||| |||| ||||||||| |||||  |||| ||||||||  ||||||||||||||||| |||||    
T  14414263 cagaccctagaagttctgccatatcattctgtaaacaaag--atttcccctatttccttcttctatatcagttggtttct 14414340  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 45036246 - 45036162
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcag 85  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45036246 cagaccctcgaagttctgcaatattattctgtaatcaaaggaattttccctattttattcttctatatcagttgatttctatcag 45036162  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 6540659 - 6540571
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatcagacac 89  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  6540659 cagacccttgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttggtttctatcacacac 6540571  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13255632 - 13255714
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    |||||||| |||||||||||||||||||||||||||||| ||| ||| || | ||||||||||||||||||||| |||||||||    
T  13255632 cagacccttgaagttctgcaatattattctgtaatcaaa-ggaatttaccaaatttattcttctatatcagttggtttctatca 13255714  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 54937871 - 54937788
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54937871 cagaccctcgaagttctgcaatattattcagtaatcaaagggattttccctattttattcttctatatcagttggtttctatca 54937788  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 54938912 - 54938829
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttctatca 84  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54938912 cagaccctcgaagttctgcaatattattcagtaatcaaagggattttccctattttattcttctatatcagttggtttctatca 54938829  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 28889826 - 28889748
Alignment:
Q  1 cagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagttgatttc 79  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  28889826 cagaccctcaaagttctgcgatattattctgtaatcaaatggattttccctatttcattcttctatatcagttggtttc 28889748  T

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