View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_42 (Length: 326)
Name: NF7665_low_42
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_42 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: scaffold0578 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 104 - 405
Alignment:
| Q |
6 |
tttggagttgcaaattagcggcattcatggaagaagcaacagttttggcctttattcacatgaaagaatgaatggaaagcatttcaaggtaagagaccac |
105 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
104 |
tttggagttgcaaattagaggcattcatggaagaagcaacagttttggcctttattcacatgaaagaatgaatggaaagcatttcaaggtaagagaccac |
203 |
T |
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| Q |
106 |
tttcatttacattcacttcacgtggtgttacgttgcttcaatagttataaactttatatttgattgttcttatgcttagaagttagagcatcaccattac |
205 |
Q |
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| T |
204 |
tttcatttacattcacttcacgtggtgttacgttgcttcaatagttataaactttatatttgattgttcttatgcttagaagttagagcatcaccattac |
303 |
T |
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| Q |
206 |
ttaacttcttgtatagtgaactatacaaattagaattatggatcaaaaattggatgccaaagtgtgaactatagcatgatgtacattacaacaatcaaat |
305 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
304 |
ttaacttcttgtatagtaaactatacaaattagaattatggatcaaaaattggatagcaaagtgtgaactatagcatgatgtacattacaacaatcaaat |
403 |
T |
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| Q |
306 |
ca |
307 |
Q |
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|| |
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| T |
404 |
ca |
405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 4954117 - 4954418
Alignment:
| Q |
6 |
tttggagttgcaaattagcggcattcatggaagaagcaacagttttggcctttattcacatgaaagaatgaatggaaagcatttcaaggtaagagaccac |
105 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4954117 |
tttggagttgcaaattagaggcattcatggaagaagcaacagttttggcctttattcacatgaaagaatgaatggaaagcatttcaaggtaagagaccac |
4954216 |
T |
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| Q |
106 |
tttcatttacattcacttcacgtggtgttacgttgcttcaatagttataaactttatatttgattgttcttatgcttagaagttagagcatcaccattac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4954217 |
tttcatttacattcacttcacgtggtgttacgttgcttcaatagttataaactttatatttgattgttcttatgcttagaagttagagcatcaccattac |
4954316 |
T |
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| Q |
206 |
ttaacttcttgtatagtgaactatacaaattagaattatggatcaaaaattggatgccaaagtgtgaactatagcatgatgtacattacaacaatcaaat |
305 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4954317 |
ttaacttcttgtatagtaaactatacaaattagaattatggatcaaaaattggatagcaaagtgtgaactatagcatgatgtacattacaacaatcaaat |
4954416 |
T |
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| Q |
306 |
ca |
307 |
Q |
| |
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|| |
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|
| T |
4954417 |
ca |
4954418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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