View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_43 (Length: 324)
Name: NF7665_low_43
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_43 |
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| [»] scaffold0011 (2 HSPs) |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 33 - 307
Target Start/End: Complemental strand, 25064953 - 25064664
Alignment:
| Q |
33 |
caggaaatggacgaatacaatatatttgctgaggaatgcaaccttaattttcttgatgttgatgtgggagggtttctttcaaatgacatatctaatgtat |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| | |||||||||||||||| |
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| T |
25064953 |
caggaaatggacgaatacaatatatttgctgaggaatgcaacctgaatttccttgatgctgatgtgggagggtttctttcacaagacatatctaatgtat |
25064854 |
T |
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| Q |
133 |
ttcaagaacaaaacaaacaacaatctttgtctttggggtccacttcaacaaatgatctcag---------------tgaaataattgataattgtgacaa |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |
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| T |
25064853 |
ttcaagaacaaaacaaacaacaatgtttgtctttggggtccacttcaacaaatgatctcagcaagtcattcattcatgaaacaattgataatagtgacaa |
25064754 |
T |
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| Q |
218 |
aatcaataaatctctttcaccaaatctttctccatcttttcaatttccaattccaaaagagaatgaaacaatatcaatgtctccaactga |
307 |
Q |
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| T |
25064753 |
aatcaataaatctctttcaccaaatctttctccatcttttcagtttccaattccaaaagagaatgaaacaatatcaatgtctccaactga |
25064664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 33 - 274
Target Start/End: Original strand, 25238973 - 25239229
Alignment:
| Q |
33 |
caggaaatggacgaatacaatatatttgctgaggaatgcaaccttaattttcttgatgttgatgtgggagggtttctttcaaatgacatatctaatgtat |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| | |||||||||||||||| |
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| T |
25238973 |
caggaaatggacgaatacaatatatttgctgaggaatgcaacctgaatttccttgatgctgatgtgggagggtttctttcacaagacatatctaatgtat |
25239072 |
T |
|
| Q |
133 |
ttcaagaacaaaacaaacaacaatctttgtctttggggtccacttcaacaaatgatctcag---------------tgaaataattgataattgtgacaa |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||| |
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| T |
25239073 |
ttcaagaacaaaacaaacaacaatgtttgtctttggggtccacttcaacaaatgatctcagcaagtcattcattcatgaaacaattgatgatagtgacaa |
25239172 |
T |
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| Q |
218 |
aatcaataaatctctttcaccaaatctttctccatcttttcaatttccaattccaaa |
274 |
Q |
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||||| | ||||||||||||||||| |||||||||||||||| |||| ||||||||| |
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| T |
25239173 |
aatcagtgaatctctttcaccaaatatttctccatcttttcagtttcaaattccaaa |
25239229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 25113682 - 25113535
Alignment:
| Q |
30 |
gtacaggaaatggacgaatacaatatatttgctgaggaatgcaaccttaattttcttgatgttgatgtgggagggtttctttcaaatgacatatctaatg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25113682 |
gtacaggaaatggacgaatacaatatatttgctgaggaatgcaaccttaatttccttgatgctgatgtgggagggtttctttcaaatgacatatctaatg |
25113583 |
T |
|
| Q |
130 |
tatttcaagaacaaaacaaacaacaatctttgtctttggggtccactt |
177 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
25113582 |
tatttcaagaacaaaacaaacaacaatgtttatctttggggtccactt |
25113535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 25239247 - 25239280
Alignment:
| Q |
271 |
caaaagagaatgaaacaatatcaatgtctccaac |
304 |
Q |
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| T |
25239247 |
caaaagagaatgaaacaatatcagtgtctccaac |
25239280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 17124786 - 17124909
Alignment:
| Q |
33 |
caggaaatggacgaatacaatatatttgctgaggaatgcaaccttaattttcttgatgttgatgtgggagggtttctttcaaatgacatatctaatgtat |
132 |
Q |
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||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||| ||||||| || |||||||||| |||||||| |||||||| |
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| T |
17124786 |
caggaaatggacgaatacaatttatttgcagaggaaagcaacctgaattttcttgatacagatgtggtagagtttctttcacatgacataggtaatgtat |
17124885 |
T |
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| Q |
133 |
ttcaagaacaaaacaaacaacaat |
156 |
Q |
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| |||||||||||||||||||||| |
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| T |
17124886 |
tccaagaacaaaacaaacaacaat |
17124909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 17115307 - 17115430
Alignment:
| Q |
33 |
caggaaatggacgaatacaatatatttgctgaggaatgcaaccttaattttcttgatgttgatgtgggagggtttctttcaaatgacatatctaatgtat |
132 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||| ||||||| || |||||| ||| |||||||| |||||||| |
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| T |
17115307 |
caggaaatggacgaatacaatttatttgctgaggaaagcaacctgaatttccttgagacagatgtggtagagtttctctcacatgacataggtaatgtat |
17115406 |
T |
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| Q |
133 |
ttcaagaacaaaacaaacaacaat |
156 |
Q |
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| | |||||||||||||||||||| |
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| T |
17115407 |
tcctagaacaaaacaaacaacaat |
17115430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 183997 - 184151
Alignment:
| Q |
32 |
acaggaaatggacgaatacaatatatttgctgaggaatgcaaccttaattttcttgatgttgatgtgggagggtttctttcaaatgacatatc---taat |
128 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||| | ||||| || ||||||||| |||||||| | |||| |
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| T |
183997 |
acaggaaatggacgaatacaatttatttgctaaggaatgcaacctgaatttccttgatactagtgtggaagattttctttcacatgacataactattaat |
184096 |
T |
|
| Q |
129 |
gtatttcaagaacaaaacaaacaacaatctttgtctttggggtccacttcaacaa |
183 |
Q |
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|| || ||||||||||| |||||||||| ||| ||| ||||||||||| |||| |
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| T |
184097 |
gtcttccaagaacaaaataaacaacaatgtttaacttcagggtccacttccacaa |
184151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 221886 - 222040
Alignment:
| Q |
32 |
acaggaaatggacgaatacaatatatttgctgaggaatgcaaccttaattttcttgatgttgatgtgggagggtttctttcaaatgacatatc---taat |
128 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||| | ||||| || ||||||||| |||||||| | |||| |
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| T |
221886 |
acaggaaatggacgaatacaatttatttgctaaggaatgcaacctgaatttccttgatactagtgtggaagattttctttcacatgacataactattaat |
221985 |
T |
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| Q |
129 |
gtatttcaagaacaaaacaaacaacaatctttgtctttggggtccacttcaacaa |
183 |
Q |
| |
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|| || ||||||||||| |||||||||| ||| ||| ||||||||||| |||| |
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| T |
221986 |
gtcttccaagaacaaaataaacaacaatgtttaacttcagggtccacttccacaa |
222040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 15489 - 15531
Alignment:
| Q |
33 |
caggaaatggacgaatacaatatatttgctgaggaatgcaacc |
75 |
Q |
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||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
15489 |
caggaaatgaacgaatacaatttaattgctgaggaatgcaacc |
15531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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