View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_44 (Length: 323)
Name: NF7665_low_44
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 27685590 - 27685277
Alignment:
| Q |
1 |
gaaagccttatactttgcagacaaatgtttatataagagggagtggtgatggaaaaattataggcagagaaatgaaatttcatctgtggtttgatcctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27685590 |
gaaagccttatactttgcagacaaatgtttatataagagggagtggtgatggaaaaattataggcagagaaatgaaatttcatctgtggtttgatcctac |
27685491 |
T |
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| Q |
101 |
caaaaaatttcatcactatgctatagtttggaatcctaaggaattaatgtaagtcactgttaatttccactctatattaatactctttcgatcctacttc |
200 |
Q |
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| T |
27685490 |
caaaaaatttcatcactatgctatagtttggaatcctaaggaattaatgtaagtcactgttaatttccactctatattaatactctttcgatcctacttt |
27685391 |
T |
|
| Q |
201 |
cactgatctcaactataagagacagttcacttaatattgatcagagacatcatttattaaataaatttaaaaaatgannnnnnnnncttacaatagagac |
300 |
Q |
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| T |
27685390 |
caccgatctcaactataagagacagttcacttaatattgatcagagacatcatttattaaataaatttaaaaaatgaattttttttcttacaatagagac |
27685291 |
T |
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| Q |
301 |
cgaagtagtataat |
314 |
Q |
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|||||||||||||| |
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| T |
27685290 |
cgaagtagtataat |
27685277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 41269106 - 41269265
Alignment:
| Q |
1 |
gaaagccttatactttgcagacaaatgtttatataagagggagtggtgatggaaaaattataggcagagaaatgaaatttcatctgtggtttgatcctac |
100 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||||||| |
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| T |
41269106 |
gaaagccttatactttgcagaccaatgtttatgtaagagggagtggtgatgggaaaattgtaggtagagaaatgaagtttcatctttggtttgatcctac |
41269205 |
T |
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| Q |
101 |
caaaaaatttcatcactatgctatagtttggaatcctaaggaattaatgtaagtcactgt |
160 |
Q |
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| T |
41269206 |
caaaggttttcatcactatgctatactatggagtcctaaagagataatgtaagtcactgt |
41269265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 21085043 - 21084967
Alignment:
| Q |
21 |
acaaatgtttatataagagggagtggtgatggaaaaattataggcagagaaatgaaatttcatctgtggtttgatcc |
97 |
Q |
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| T |
21085043 |
acaaatgtatatatgagaggaagtggagatgggaacattataggaagagagatgcaatttcatctttggtttgatcc |
21084967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 40871073 - 40871149
Alignment:
| Q |
15 |
ttgcagacaaatgtttatataagagggagtggtgatggaaaaattataggcagagaaatgaaatttcatctgtggtt |
91 |
Q |
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|||||||||||||| || || ||||| ||||| ||||| || | |||||| ||||| |||| ||||||||| ||||| |
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| T |
40871073 |
ttgcagacaaatgtgtacattagaggaagtggagatgggaagaatataggaagagagatgagatttcatctttggtt |
40871149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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