View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_45 (Length: 298)
Name: NF7665_low_45
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 37035264 - 37034975
Alignment:
| Q |
1 |
taagtattggacataagaacacggaataagacataagacacattactaacttttattatattgaacaannnnnnnnatcttagacgacgatccttggtgg |
100 |
Q |
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| T |
37035264 |
taagtattggacataagaacacggaataagacataagacacattactaactttaattatattgaacaattttttttatcttagacgacgatccttggtgg |
37035165 |
T |
|
| Q |
101 |
ataaaagtctatttgggtattttattcacttgtatttgaggcaaaaagttgtattcgg-tttagtaaatgacaataatttcaatttttgtcagtgtccat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| || |||||| | |
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| T |
37035164 |
ataaaagtctatttgggtattttattcacttgtatttgaggcaaaaagttgtattctgatttagtaaatgataataatttcaatttttatc-gtgtcctt |
37035066 |
T |
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| Q |
200 |
tacccactaagtttatctagttcctgatgtagttttacaatcacacagtataaatgtagttatcatgtccaatcttttatttattcttctc |
290 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37035065 |
taccctctaagtttatctagttcctgatgtagttttacaatcacatagtataaatgtagttatcatgtccaatcttttatttatttttctc |
37034975 |
T |
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Back To:
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 32215324 - 32215291
Alignment:
| Q |
156 |
cggtttagtaaatgacaataatttcaatttttgt |
189 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
32215324 |
cggtttagtaaatgacaagaatttcaatttttgt |
32215291 |
T |
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