View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7665_low_5 (Length: 680)

Name: NF7665_low_5
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7665_low_5
NF7665_low_5
[»] chr2 (12 HSPs)
chr2 (5-673)||(14395107-14395764)
chr2 (40-114)||(17239661-17239735)
chr2 (44-95)||(30353948-30353999)
chr2 (38-115)||(26683777-26683853)
chr2 (40-95)||(11671215-11671270)
chr2 (42-117)||(25985110-25985184)
chr2 (44-93)||(35319341-35319390)
chr2 (127-169)||(14394987-14395029)
chr2 (47-93)||(38570605-38570651)
chr2 (40-93)||(6607932-6607985)
chr2 (40-84)||(32904848-32904892)
chr2 (42-96)||(33451002-33451056)
[»] chr4 (21 HSPs)
chr4 (44-117)||(41377934-41378007)
chr4 (40-93)||(39267565-39267618)
chr4 (40-90)||(1846231-1846281)
chr4 (40-102)||(19351321-19351383)
chr4 (38-90)||(12619482-12619534)
chr4 (40-92)||(25313361-25313413)
chr4 (40-96)||(30265523-30265579)
chr4 (40-96)||(30279716-30279772)
chr4 (40-96)||(30286608-30286664)
chr4 (40-96)||(33859957-33860013)
chr4 (44-95)||(32296153-32296204)
chr4 (40-95)||(48801946-48802001)
chr4 (40-102)||(28703715-28703777)
chr4 (42-96)||(46826692-46826746)
chr4 (40-113)||(33653078-33653151)
chr4 (38-103)||(15633188-15633252)
chr4 (40-84)||(46444252-46444296)
chr4 (44-95)||(20668032-20668082)
chr4 (36-102)||(21327887-21327953)
chr4 (45-95)||(39734596-39734646)
chr4 (60-117)||(32887018-32887075)
[»] chr7 (8 HSPs)
chr7 (38-89)||(44565167-44565218)
chr7 (38-93)||(45843599-45843654)
chr7 (60-117)||(37492706-37492763)
chr7 (36-114)||(25005477-25005555)
chr7 (38-103)||(33058138-33058202)
chr7 (41-93)||(29693055-29693107)
chr7 (51-117)||(21275337-21275403)
chr7 (38-79)||(37492649-37492690)
[»] chr1 (9 HSPs)
chr1 (40-114)||(30717264-30717338)
chr1 (40-114)||(8981784-8981858)
chr1 (40-96)||(27081699-27081755)
chr1 (38-114)||(30996445-30996521)
chr1 (41-92)||(36140796-36140847)
chr1 (44-78)||(29522189-29522223)
chr1 (48-96)||(41098571-41098619)
chr1 (54-117)||(1609543-1609606)
chr1 (54-117)||(35492064-35492127)
[»] chr8 (8 HSPs)
chr8 (41-118)||(28140732-28140808)
chr8 (47-117)||(17097547-17097618)
chr8 (40-90)||(8768901-8768951)
chr8 (47-97)||(17102194-17102244)
chr8 (41-94)||(23588140-23588193)
chr8 (40-96)||(13526064-13526120)
chr8 (40-96)||(13615599-13615655)
chr8 (40-114)||(8183553-8183627)
[»] chr3 (2 HSPs)
chr3 (40-93)||(24978489-24978542)
chr3 (36-117)||(49350830-49350911)
[»] chr5 (5 HSPs)
chr5 (40-92)||(471507-471559)
chr5 (38-102)||(27990161-27990225)
chr5 (40-97)||(39165484-39165540)
chr5 (41-84)||(36593847-36593890)
chr5 (40-77)||(36189025-36189062)
[»] scaffold0193 (1 HSPs)
scaffold0193 (42-95)||(20025-20078)
[»] scaffold0008 (1 HSPs)
scaffold0008 (40-114)||(240652-240726)
[»] chr6 (4 HSPs)
chr6 (52-117)||(22398330-22398395)
chr6 (44-117)||(35033583-35033656)
chr6 (44-79)||(32505726-32505762)
chr6 (42-90)||(34805961-34806009)


Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 5 - 673
Target Start/End: Original strand, 14395107 - 14395764
Alignment:
Q  5 tgtccaaaaacttttacaaatttannnnnnnagaaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaat 104  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||    
T  14395107 tgtccaaaaacttttacaaatttatttttttagaaattgaaaattaatattttataataaatatttaccatttataaaatccttaacatgtgccataaat 14395206  T
Q  105 gcacaagttagcagatcctatcaataattcaattttagtagtaaatatctaaattaatactactgattcgatcttaaagaaattcaaatattggacaaat 204  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14395207 gcacaagttagcagaccctatcaataattcaattttagtagtaaatatctaaattaatactactgattcgatcttaaagaaactcaaatattggacaaat 14395306  T
Q  205 ttgttcctaatagagaataaaatggtttgtaattattttaaaattgaccattttgacatgcagttttgtaagattcgcaatgatcaaattcttttattta 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14395307 ttgttcctaatagagaataaaatggtttgtaattattttaaaattgaccattttgacatgcagttttgtaagattcgcaatgatcaaattcttttattt- 14395405  T
Q  305 tttaggtcttgttggaacaatttgcaaaatatattttgaaagttgcgatgatttaaaagaattaagaacctcttaacatcataaggacttgtttggccca 404  Q
              ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14395406 ----------gttggaacaatttgcaaaatatattttgaaagttgcgctgatttaaaagaattaagaacctcttaacatcataaggacttgtttggccta 14395495  T
Q  405 gtggtttaatggtttgagtattcattatgaggtagtccgtgacgttttgattttattttcaaaacaaattacattcaaaacataaactagcaccggttgc 504  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14395496 gtggtttaatgatttgagtattcattatgaggtagtccgtgacgttttgattttattttcaaaacaaattacattcaaaacataaactagcaccggttgc 14395595  T
Q  505 gttcaaatccgccaaattattacatgtaaggattctaaaatatttaaaaggagattcttcggtttttccatttgcatccgatttacataaactggtggga 604  Q
     |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||  || ||||     
T  14395596 tttcaaatccgccaaattattgcatgtaagggttctaaaatatttagaaggagattcttcgatttttctatttgcatccggtttacataacttgatgggg 14395695  T
Q  605 acaaatcaaacctaaaacttaatgatttacacacactttaaaatttatttgtacaatcattgtcatatt 673  Q
    |||||||||||| |||| |||||| | ||||   |||||||||||||||||||||||||||||||||||    
T  14395696 acaaatcaaaccgaaaatttaatgttctacatgtactttaaaatttatttgtacaatcattgtcatatt 14395764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 17239735 - 17239661
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagtta 114  Q
    ||||||||||||||||||||||||||||||||||||||||  |||  |||||||||| ||||||||||| |||||    
T  17239735 attgaaaattaatattttgtaataaatatttaccatttatggaatgtttaacatgtgccctaaatgcacgagtta 17239661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 30353999 - 30353948
Alignment:
Q  44 aaaattaatattttgtaataaatatttaccatttataaaatccttaacatgt 95  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  30353999 aaaattaatattttgtaataaatatttatcattgataaaatccttaacatgt 30353948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 26683777 - 26683853
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttag 115  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |||| ||||||  ||||||||||    
T  26683777 aaattaaaaattaatattttataataaatatttaccatttagaaaattcttaacttgtg-cctaaagacacaagttag 26683853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 11671270 - 11671215
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgt 95  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||||| ||||    
T  11671270 attgaaaattaatgctttgtaataaatatttactatttataaaatccttaatatgt 11671215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 25985184 - 25985110
Alignment:
Q  42 tgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    ||||||||||  ||||||||||||||||||||||||||  ||| |||||||||||| |||||  ||||||||||||    
T  25985184 tgaaaattaaggttttgtaataaatatttaccatttatggaattcttaacatgtgt-ctaaagacacaagttagca 25985110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 35319341 - 35319390
Alignment:
Q  44 aaaattaatattttgtaataaatatttaccatttataaaatccttaacat 93  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  35319341 aaaattaatgttttgtaataaatatttactatttatagaatccttaacat 35319390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 14394987 - 14395029
Alignment:
Q  127 aataattcaattttagtagtaaatatctaaattaatactactg 169  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  14394987 aataattcatttttagtagtaaatatataaattaatactactg 14395029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 38570605 - 38570651
Alignment:
Q  47 attaatattttgtaataaatatttaccatttataaaatccttaacat 93  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||||    
T  38570605 attaatgttttataataaatatttaccatttataaaatcgttaacat 38570651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 6607932 - 6607985
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacat 93  Q
    ||||||||||| | |||||||||||||||| |||||||||  ||||||||||||    
T  6607932 attgaaaattagtgttttgtaataaatattcaccatttatggaatccttaacat 6607985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 32904848 - 32904892
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaat 84  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||    
T  32904848 attgaaaattaatgttttgtaataaatatttactatttatgaaat 32904892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 33451056 - 33451002
Alignment:
Q  42 tgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||||||| |||| |||||| ||||||| ||||||| |||||||| ||||||    
T  33451056 tgaaaattaattttttttaataattatttactatttatagaatccttatcatgtg 33451002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 41378007 - 41377934
Alignment:
Q  44 aaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    |||||||| ||||||||||||||||||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  41378007 aaaattaaaattttgtaataaatatttaccatttataaaatatttaacatgtgtcataaatgtacaagttagca 41377934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 39267618 - 39267565
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacat 93  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  39267618 attgaaaattaatgttttgtaataaatatttatcatttataaaatccttaacat 39267565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 1846231 - 1846281
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaa 90  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1846231 attgaaaattaatgttttgtaataaatatttaccatttatgaaatccttaa 1846281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 19351321 - 19351383
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||   ||| |||||||||| |||||    
T  19351321 attgaaaattaatattttgtaataaatatttaccatttatggtatcattaacatgtgccctaa 19351383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 12619482 - 12619534
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaa 90  Q
    ||||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  12619482 aaattgaaaattaatgttttgtaataaatatttaccaattatgaaatccttaa 12619534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 25313413 - 25313361
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaaca 92  Q
    |||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  25313413 attgaaaattaatattttgtaataaatatttaccatttatgaagtctttaaca 25313361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 30265523 - 30265579
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||    
T  30265523 attgaaaattaatgttttgtgataaatatttactatttatagaatccttaacatgtg 30265579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 30279772 - 30279716
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||    
T  30279772 attgaaaattaatgttttgtgataaatatttactatttatagaatccttaacatgtg 30279716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 30286664 - 30286608
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||    
T  30286664 attgaaaattaatgttttgtgataaatatttactatttatagaatccttaacatgtg 30286608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 33859957 - 33860013
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||||||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  33859957 attgaaaattaatgttttgtaataaatatttatcatatatagaatccttaacatgtg 33860013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 32296204 - 32296153
Alignment:
Q  44 aaaattaatattttgtaataaatatttaccatttataaaatccttaacatgt 95  Q
    ||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  32296204 aaaattaatgttttgtaataaatatttaccattcataaaatctttaacatgt 32296153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 48802001 - 48801946
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgt 95  Q
    |||||||||||||||||| ||||||||||||| |||||||  ||||||||||||||    
T  48802001 attgaaaattaatattttttaataaatatttatcatttatggaatccttaacatgt 48801946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 28703715 - 28703777
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaa 102  Q
    ||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||| || |||||    
T  28703715 attgagaattaatgttttgtaataaatatttaccatatatgaaatccttaacatatgccctaa 28703777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 46826692 - 46826746
Alignment:
Q  42 tgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||||||| |||| |||||||||||||||||||||  |||||||||||||||    
T  46826692 tgaaaattaatgttttttaataaatatttaccatttatggaatccttaacatgtg 46826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 33653151 - 33653078
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagtt 113  Q
    ||||||||||||| |||| ||||||| ||||| ||||||| |||||||||| ||||| |||||  |||||||||    
T  33653151 attgaaaattaatgttttataataaaaatttatcatttatgaaatccttaatatgtgccctaagagcacaagtt 33653078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 15633252 - 15633188
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaa 103  Q
    ||||||||||||| | ||||||||||||||||||||||||||  ||| |||||||| || ||||||    
T  15633252 aaattgaaaatta-tgttttgtaataaatatttaccatttatggaattcttaacatatgccctaaa 15633188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 46444252 - 46444296
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaat 84  Q
    ||||||||||||| |||||||||||||||||| ||||||| ||||    
T  46444252 attgaaaattaatgttttgtaataaatatttatcatttatgaaat 46444296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 20668082 - 20668032
Alignment:
Q  44 aaaattaatattttgtaataaatatttaccatttataaaatccttaacatgt 95  Q
    |||||||||||||||||||||||||||| |||||| | ||| ||||||||||    
T  20668082 aaaattaatattttgtaataaatatttatcatttacagaat-cttaacatgt 20668032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 21327953 - 21327887
Alignment:
Q  36 agaaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaa 102  Q
    |||| |||||||||||| |||  |||||||||||||| ||||| | ||| |||||||||||| ||||    
T  21327953 agaagttgaaaattaatttttcataataaatatttactatttacagaattcttaacatgtgttctaa 21327887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 39734646 - 39734596
Alignment:
Q  45 aaattaatattttgtaataaatatttaccatttataaaatccttaacatgt 95  Q
    |||||||| |||| |||||||||||||| ||| ||||||| ||||||||||    
T  39734646 aaattaattttttataataaatatttactattaataaaattcttaacatgt 39734596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 32887075 - 32887018
Alignment:
Q  60 aataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    |||||||||||||  ||||||||| |||||||||||| |||||   ||||||||||||    
T  32887075 aataaatatttactctttataaaaaccttaacatgtgacctaatgacacaagttagca 32887018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 44565218 - 44565167
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttataaaatcctta 89  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44565218 aaattgaaaattaatgttttgtaataaatatttaccatttataaaatcctta 44565167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 45843654 - 45843599
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacat 93  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  45843654 aaattgaaaattaatattttgtaataaatatttatcatttataaaatctttaacat 45843599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 37492706 - 37492763
Alignment:
Q  60 aataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  37492706 aataaatatttatcatttataaaatccttaacatgtgtcctaaagacacaagttagca 37492763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 25005555 - 25005477
Alignment:
Q  36 agaaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagtta 114  Q
    |||||||| |||||||| ||||||||||||||||||  ||||||| |||| |||||||||| | |||| ||||||||||    
T  25005555 agaaattgtaaattaatgttttgtaataaatatttaaaatttatagaatctttaacatgtgccttaaaggcacaagtta 25005477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 33058202 - 33058138
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaa 103  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||||  |||||||||||| ||||    
T  33058202 aaattgaaaattaatattttataataaatatttatcatttctaaaat-tttaacatgtgtcttaaa 33058138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 29693055 - 29693107
Alignment:
Q  41 ttgaaaattaatattttgtaataaatatttaccatttataaaatccttaacat 93  Q
    |||||||||||||||||||||||||||||||| ||| ||  ||||||||||||    
T  29693055 ttgaaaattaatattttgtaataaatatttactattcatggaatccttaacat 29693107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 21275403 - 21275337
Alignment:
Q  51 atattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    ||||||| |||||||||| ||||||||| |||||| ||| |||||||| ||||   |||||||||||    
T  21275403 atattttataataaatatgtaccatttaaaaaatctttagcatgtgtcataaaaatacaagttagca 21275337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 37492649 - 37492690
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttat 79  Q
    ||||||||||||||| |||| ||||||||||||| |||||||    
T  37492649 aaattgaaaattaatgttttataataaatatttatcatttat 37492690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 30717338 - 30717264
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagtta 114  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||||||||||  ||||||  |||||||||    
T  30717338 attgaaaattaatgttttgtaataaatatttactgtttataaaatccttaacatgtaccctaaagacacaagtta 30717264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 8981784 - 8981858
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagtta 114  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||| | |||  ||||||||||    
T  8981784 attgaaaattaatgttttgtaatgaatatttaccatttatgaaatctttaacatgtgccttaagagcacaagtta 8981858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 27081699 - 27081755
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||    
T  27081699 attgaaaattaatgttttgtaataaatatttactatttatagaatctttaacatgtg 27081755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 30996445 - 30996521
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagtta 114  Q
    ||||| ||||||||| |||||||||||||||||  ||||||| |||||| ||| |||| || |||| ||||||||||    
T  30996445 aaattaaaaattaatgttttgtaataaatatttttcatttatgaaatccataatatgtatcataaaagcacaagtta 30996521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 36140847 - 36140796
Alignment:
Q  41 ttgaaaattaatattttgtaataaatatttaccatttataaaatccttaaca 92  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  36140847 ttgaaaattaatattttgtgataaatatttaccatttatggaatctttaaca 36140796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 29522189 - 29522223
Alignment:
Q  44 aaaattaatattttgtaataaatatttaccattta 78  Q
    |||||||||||||||||||||||||||||||||||    
T  29522189 aaaattaatattttgtaataaatatttaccattta 29522223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 41098619 - 41098571
Alignment:
Q  48 ttaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  41098619 ttaatgttttataataaatatttaccatttataaaatttttaacatgtg 41098571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 1609543 - 1609606
Alignment:
Q  54 ttttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    ||||||||||||||||||| ||||||  |||||||||||| ||  | ||| |||||||||||||    
T  1609543 ttttgtaataaatatttactatttatggaatccttaacatatgctccaaaggcacaagttagca 1609606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 35492064 - 35492127
Alignment:
Q  54 ttttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    ||||||||||||||||||||||||||  | |||||||||||||  || | ||||||| ||||||    
T  35492064 ttttgtaataaatatttaccatttatggagtccttaacatgtgctctcagtgcacaacttagca 35492127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 28140732 - 28140808
Alignment:
Q  41 ttgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagcag 118  Q
    |||||||||||| |||||||||||||||| || ||||||  ||||||||||||||||||||||  |||||||||||||    
T  28140732 ttgaaaattaatgttttgtaataaatatt-actatttatggaatccttaacatgtgtcctaaagacacaagttagcag 28140808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 17097547 - 17097618
Alignment:
Q  47 attaatattttgtaataaatatttacca-tttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    ||||||||||| |||||||||||||||| |||||  |||||||||||||||| |||||  ||||||||||||    
T  17097547 attaatattttctaataaatatttaccattttattgaatccttaacatgtgttctaaaaacacaagttagca 17097618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 8768901 - 8768951
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaa 90  Q
    ||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  8768901 attgaaaattaatgttttgtaataaatatttaccatttattgaatccttaa 8768951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 17102194 - 17102244
Alignment:
Q  47 attaatattttgtaataaatatttaccatttataaaatccttaacatgtgt 97  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  17102194 attaatattttctaataaatatttaccatttatggaatccttaacatgtgt 17102244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 23588140 - 23588193
Alignment:
Q  41 ttgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatg 94  Q
    ||||||||||||||||||||||||||||||| || ||||| ||| |||| ||||    
T  23588140 ttgaaaattaatattttgtaataaatatttatcaattatagaattcttagcatg 23588193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 13526064 - 13526120
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||| ||||| |||||||||| |||||||| ||||||  |||||||||||||||    
T  13526064 attgaaatttaatgttttgtaatagatatttactatttatggaatccttaacatgtg 13526120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 13615599 - 13615655
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtg 96  Q
    ||||||| ||||| |||||||||| |||||||| ||||||  |||||||||||||||    
T  13615599 attgaaatttaatgttttgtaatagatatttactatttatggaatccttaacatgtg 13615655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 8183627 - 8183553
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagtta 114  Q
    ||||||||||||| ||||||| |||||  |||| | ||||  |||| |||||||||| |||||| ||||||||||    
T  8183627 attgaaaattaatgttttgtagtaaatgattactagttatggaatcattaacatgtgccctaaaagcacaagtta 8183553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 24978489 - 24978542
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacat 93  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  24978489 attgaaaattaatattttttaataaatatttaccatttataaaatctttaacat 24978542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 49350830 - 49350911
Alignment:
Q  36 agaaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||  |||||||||||| |  |||||  | |||||||||||    
T  49350830 agaaattgaaagttaaagttttgtaataaatatttaccatttatggaatccttaacatataccctaagggtacaagttagca 49350911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 471507 - 471559
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaaca 92  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  471507 attgaaaattaatgttttataataaatatttaccatttataaaatcgttaaca 471559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 27990161 - 27990225
Alignment:
Q  38 aaattgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaa 102  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||  |||| ||||||||||||||||    
T  27990161 aaattgaaaattaatgttttgtaataaatatctactatttatggaatcattaacatgtgtcctaa 27990225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 39165540 - 39165484
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgt 97  Q
    |||||||||||||||||  || ||||||||||| ||||||| ||||||||||||||||    
T  39165540 attgaaaattaatattta-tattaaatatttactatttatataatccttaacatgtgt 39165484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 36593890 - 36593847
Alignment:
Q  41 ttgaaaattaatattttgtaataaatatttaccatttataaaat 84  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||    
T  36593890 ttgaaaattaatgttttgtaataaatatttactatttatgaaat 36593847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 36189062 - 36189025
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccattt 77  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  36189062 attgaaaattaatgttttataataaatatttaccattt 36189025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 20078 - 20025
Alignment:
Q  42 tgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgt 95  Q
    ||||||||||| ||||||||||||||||||||||||||| |||  |||||||||    
T  20078 tgaaaattaatgttttgtaataaatatttaccatttatataatttttaacatgt 20025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 240652 - 240726
Alignment:
Q  40 attgaaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagtta 114  Q
    ||||||| | ||| |||| ||||||||||||| |||||||  ||||||||||||||||| |||  ||||||||||    
T  240652 attgaaagtaaatgttttataataaatatttatcatttatggaatccttaacatgtgtcataagggcacaagtta 240726  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 22398395 - 22398330
Alignment:
Q  52 tattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    |||||||||||||||||||| |||||||  |||| ||||||||||  ||||  |||||||||||||    
T  22398395 tattttgtaataaatatttatcatttatggaatctttaacatgtgctctaagggcacaagttagca 22398330  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 35033583 - 35033656
Alignment:
Q  44 aaaattaatattttgtaataaatatttaccatttataaaatccttaacatgtgtcctaaatgcacaagttagca 117  Q
    ||||||||| |||||||||| ||||||||  ||||||||||| |||||||||| | ||||  |||| |||||||    
T  35033583 aaaattaatgttttgtaatacatatttactgtttataaaatctttaacatgtgccttaaagtcacaggttagca 35033656  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 32505726 - 32505762
Alignment:
Q  44 aaaattaatatttt-gtaataaatatttaccatttat 79  Q
    |||||||||||||| ||||||||||||||||||||||    
T  32505726 aaaattaatatttttgtaataaatatttaccatttat 32505762  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 34805961 - 34806009
Alignment:
Q  42 tgaaaattaatattttgtaataaatatttaccatttataaaatccttaa 90  Q
    ||||||||||| ||||||| |||||||||| |||||||| |||| ||||    
T  34805961 tgaaaattaatgttttgtagtaaatatttatcatttatagaatctttaa 34806009  T

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