View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_56 (Length: 258)
Name: NF7665_low_56
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 42230085 - 42229959
Alignment:
| Q |
114 |
caggaacatagtcccgtgtcccaaactaggagactacaatattattaaaaa-caagaaacaaagtgtagttatatggataatgatgtttatttaaacacg |
212 |
Q |
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| T |
42230085 |
caggaacatagtcccgtgtcccaaactaggaaactacaatattattaaaaaacaagaaacaaagtgtagttatatggataatgatatttatttaaacacg |
42229986 |
T |
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| Q |
213 |
tgtgccaccaacaggaccacccttgtg |
239 |
Q |
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| T |
42229985 |
agtgccaccaacaggaccacccttgtg |
42229959 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 42230198 - 42230113
Alignment:
| Q |
1 |
aagcaaattgcaaatacatgattaattgcagccattggtatacacaacgtaatgctacaaagtgacactcttcatacaacaaaccc |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42230198 |
aagcaaattgcaaatacatgattaattgcagccattggtatacacaatgtaatgctacaaagtgacactcttcatacaacaaaccc |
42230113 |
T |
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