View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_65 (Length: 232)
Name: NF7665_low_65
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 14003422 - 14003254
Alignment:
| Q |
45 |
atcaatatgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagca |
144 |
Q |
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| T |
14003422 |
atcaatatgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagca |
14003323 |
T |
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| Q |
145 |
cttgtttacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003322 |
cttgtttacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca |
14003254 |
T |
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Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 5767382 - 5767553
Alignment:
| Q |
45 |
atcaatatgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctag-- |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767382 |
atcaatatgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcg |
5767481 |
T |
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| Q |
143 |
-cacttgtttacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca |
213 |
Q |
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| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767482 |
ccgcttgtttagaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca |
5767553 |
T |
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