View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_66 (Length: 229)
Name: NF7665_low_66
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_66 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 45386375 - 45386254
Alignment:
| Q |
110 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagataa--aaaaggatactgaaaatgaagggtac |
207 |
Q |
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| T |
45386375 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagataaaaaaaaggatactgaaaatgaagggtac |
45386276 |
T |
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| Q |
208 |
tgtacaatatttaagtgttttt |
229 |
Q |
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| T |
45386275 |
tgtacaatatttaagtcttttt |
45386254 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 45390734 - 45390626
Alignment:
| Q |
112 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacaggagat--aaaaaaggatactgaaaatgaagggta |
206 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| || ||||| ||||||| |||||||| |||| |
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| T |
45390734 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagaggaaatcaaaaaacggatacttaaaatgaatggta |
45390635 |
T |
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| Q |
207 |
ctgtacaat |
215 |
Q |
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| T |
45390634 |
ctgtccaat |
45390626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 734341 - 734233
Alignment:
| Q |
112 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacaggagat--aaaaaaggatactgaaaatgaagggta |
206 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| || ||||| ||||||| |||||||| |||| |
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| T |
734341 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagaggaaatcaaaaaacggatacttaaaatgaatggta |
734242 |
T |
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| Q |
207 |
ctgtacaat |
215 |
Q |
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|||| |||| |
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| T |
734241 |
ctgtccaat |
734233 |
T |
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