View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7665_low_7 (Length: 631)
Name: NF7665_low_7
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 11 - 612
Target Start/End: Complemental strand, 52799660 - 52799060
Alignment:
| Q |
11 |
tggtcaaagatggtcgcgctgaaatcagtatggatgacaaacgttcacactatgtttgtaagacttgcttctgtcacaattacccaactatttgctttca |
110 |
Q |
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| T |
52799660 |
tggtcaaagatggtcgcgctgaaatcagtatggatgacaaacgttcacactatgtttgtaagacttgcttctgtcacaattacccaactatttgctttca |
52799561 |
T |
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| Q |
111 |
ttttannnnnnnngcactgtttgtactgaaattgaatatgtgctatctttttcagcactaaagaatgctcctgctgccaactctataatgtcaaaagaag |
210 |
Q |
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| T |
52799560 |
ttttattttttt-gcactgtttgtacttaaattgaatatgtgctatctttttcagcaccaaagaatgctcctgctgccaactctataatgtcaaaagaag |
52799462 |
T |
|
| Q |
211 |
tttcttacactcattttgtcttcagatatgattacaaagattggaaggtataaacatgcccactttttgttaagttggaaattcaaatcatcaatattaa |
310 |
Q |
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| T |
52799461 |
tttcttacactcattttgtcttcagatatgattacaaagattggaaggtatagacatgcccactttttgttaagttggaaattcaaatcatcaatattaa |
52799362 |
T |
|
| Q |
311 |
tggaattttcttacacattttgtttttatggaacttatgctgacaaataatagattactctgttcatttcaagtcttgtacattgaattacgattctttt |
410 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52799361 |
tggagttttcttacacattttgtttttatggaacttatgctgacaaataatacattactctgttcatttcaagtcctgtacattgaattacgattctttt |
52799262 |
T |
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| Q |
411 |
tgtaactctgttgacattgttttcaaattcagataatgaaggatattgtgcctgatggcaaagagctaatgccacataggattcagtacagtactgcggc |
510 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52799261 |
tgtaactccgttgacattgttttcaaattcagataatgaaggatattgtgcctgatggcaaagagctaatgccacataggattcagtacagtactgcggc |
52799162 |
T |
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| Q |
511 |
tgatccatcacaggaagagatgggtggtgacagttccacacaagctttggctgtgactcctatcaggaagatatctaggaaccgagggcgtgttctgcag |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52799161 |
tgatccatcacaggaagagatgggtggtgacagttccacacaagctttggctgtgactcctatcaggaagatatctaggaaccgagggcgtgttctgcag |
52799062 |
T |
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| Q |
611 |
ga |
612 |
Q |
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|| |
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| T |
52799061 |
ga |
52799060 |
T |
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