View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7665_low_8 (Length: 619)
Name: NF7665_low_8
Description: NF7665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7665_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 14 - 596
Target Start/End: Original strand, 8251947 - 8252529
Alignment:
| Q |
14 |
aagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggacactt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8251947 |
aagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttccttaatacaaagaataagcggacactt |
8252046 |
T |
|
| Q |
114 |
ttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaatacccacaaa |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
8252047 |
ctccctcaccaactgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaacacccacaaa |
8252146 |
T |
|
| Q |
214 |
gaccaccaccccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttattttttcttctcacactagacaacacatca |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
8252147 |
gaccaccaccccgacctccctccacgccctcacttcctcaactcacttcccttgcccatcaccttatttattttttcttctcacactagacaacacatca |
8252246 |
T |
|
| Q |
314 |
aacatattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagcaccaacc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8252247 |
aacatattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagcaccaacc |
8252346 |
T |
|
| Q |
414 |
agttctgccactcattattaacttacgactgagaagcactacggtctttagccggaagtcttgcaatatgcctcatactttgtgctgtatgacgcagata |
513 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8252347 |
agttctgccactcattattaactgacgactgagaagcactacggtctttagccggaagtcttgcaatatgcctcatactttgtgccgtatgacgcagata |
8252446 |
T |
|
| Q |
514 |
accagctcccttttgtttgttaacatgaggtccacttgtagatgtagaattaaaagtgacatttttatttgatgttaaatcac |
596 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8252447 |
accaactcccttttgtttgttaacatgaggtccacttgtagatgtagaattaaaagtgacatttttatttgatgttaaatcac |
8252529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 31121360 - 31121326
Alignment:
| Q |
115 |
tccctcaccaattgtctcacctccctcctcttctc |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31121360 |
tccctcaccaattgtctcacctccctcctcttctc |
31121326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 14 - 453
Target Start/End: Original strand, 44894115 - 44894556
Alignment:
| Q |
14 |
aagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggacactt |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||| | ||||||| ||| ||| |||||||||||||||||||||| ||||||| |||| || |
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|
| T |
44894115 |
aagaataaccaacatttgcatcgctccaaatagatttacataacatatcatcaaacataacacactttgtttcctgaatacatagaataaaaggactttt |
44894214 |
T |
|
| Q |
114 |
ttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaatacccacaaa |
213 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||| || ||||||||||| || ||||| |||||||||||||||| | | ||| ||| | |
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|
| T |
44894215 |
ctccgtcaccaactgtctcacctccctcctcttctcaaaacctcccaaaccccgaacgttccatgaaatgagcttcatttaa---aaaaatctacaccca |
44894311 |
T |
|
| Q |
214 |
gaccaccacc-----ccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttattttttcttctcacactagacaaca |
308 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| ||| ||| |||||||||||| | || | |||||||||||||||||| ||||| ||||||||| | |
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|
| T |
44894312 |
ctccaccaccaaaaaccgacctacctccactcccacacccccttaactcacttccccttcccaacaccctctttattttttcgtctcagactagacaaaa |
44894411 |
T |
|
| Q |
309 |
catcaaacatattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagcac |
408 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||| ||||||||||| ||||||||| ||| ||||| || || | |||||||||||||||||| |
|
|
| T |
44894412 |
catcaaacatattattattatctccgccaaattttagtccaatctcctttcctatccccgtaacatcctcctgtgccactcgatcagtaccatgaagcac |
44894511 |
T |
|
| Q |
409 |
caaccagttctgccactcattattaacttacgactgagaagcact |
453 |
Q |
| |
|
|||||| |||| ||| ||||||||||| | ||||||||| |||| |
|
|
| T |
44894512 |
caaccaattctcccagtcattattaacagatgactgagaaacact |
44894556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 19156759 - 19157178
Alignment:
| Q |
14 |
aagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggacactt |
113 |
Q |
| |
|
||||||||| |||||||| |||||||| || | | |||||| ||||||| |||| || |||| || | |||||||||||||||||||| |||||||| |
|
|
| T |
19156759 |
aagaataacaaacatttgggtcgccccaaatggtttgacacatcatatcatcaaaattaacacatttggattcctgaatacaaagaataaaaggacactt |
19156858 |
T |
|
| Q |
114 |
ttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaatacccacaaa |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||| ||||| ||||||||| | | || | |||||| |
|
|
| T |
19156859 |
ctacctcaccaattgtctcacctccctcctcttttcaaaactccccagaccccttacattccatgaaataagcttcattaaaacaactgaaacccac-tc |
19156957 |
T |
|
| Q |
214 |
gaccaccaccccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttattttttcttctcacactagacaacacatca |
313 |
Q |
| |
|
|||||| || ||| ||| |||||||||| || ||||||||||||||| || | ||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
19156958 |
caccacctaccactcctttctcgacaccctcaccacc-caactcacttccctttcccaacaccctctttattttttggtctcacactagataacacatca |
19157056 |
T |
|
| Q |
314 |
aacatattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagcaccaacc |
413 |
Q |
| |
|
|||||| ||||||| || || |||||| | |||| |||||||||| | || ||||||||| | | || |||| |||||||||||||||||| |
|
|
| T |
19157057 |
aacataatatttttgtctccattaaatttgagaccaagttccttccctaactccttaacgtcctcattagccactttatcaataccatgaagcaccaacc |
19157156 |
T |
|
| Q |
414 |
agttctgccactcattattaac |
435 |
Q |
| |
|
|||| ||||| ||||||||||| |
|
|
| T |
19157157 |
agttttgccaatcattattaac |
19157178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 566
Target Start/End: Original strand, 19157303 - 19157411
Alignment:
| Q |
458 |
tctttagccggaagtcttgcaatatgcctcatactttgtgctgtatgacgcagataaccagctcccttttgtttgttaacatgaggtccacttgtagatg |
557 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||| ||||| || ||||| | ||||||| ||| ||||||| ||| ||| || || ||||||||||| | |
|
|
| T |
19157303 |
tcttttgccggaagtctagcaatacgcctcatgctttgcgccgtatgtcttagataactagcacccttttttttattagcacacggaccacttgtagagg |
19157402 |
T |
|
| Q |
558 |
tagaattaa |
566 |
Q |
| |
|
|||||||| |
|
|
| T |
19157403 |
aagaattaa |
19157411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 12786890 - 12786977
Alignment:
| Q |
281 |
ttattttttcttctcacactagacaacacatcaaacatattatttttatcccctgcaaattttatcccaatctccttccctatccccc |
368 |
Q |
| |
|
||||||||||||| | | ||||||||||||||||||| ||||||||||||||| |||||| | |||| | ||||||||||||||| |
|
|
| T |
12786890 |
ttattttttcttccctccctagacaacacatcaaacagattatttttatccccattaaatttaagtccaaccgccttccctatccccc |
12786977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 20506995 - 20506957
Alignment:
| Q |
397 |
accatgaagcaccaaccagttctgccactcattattaac |
435 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20506995 |
accatgaagcaccaaccagttttgccactcattattaac |
20506957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 13154307 - 13154231
Alignment:
| Q |
258 |
acttcccttgcctatcaccctctttattttttcttctcacactagacaacacatcaaacatattatttttatcccct |
334 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||| ||| | |||||||||||||| ||||||| || |||||| |
|
|
| T |
13154307 |
acttccctttcccatctccctctttattttttcttcccacccctgacaacacatcaaatttattattcttgtcccct |
13154231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 33096280 - 33096217
Alignment:
| Q |
271 |
atcaccctctttattttttcttctcacactagacaacacatcaaacatattatttttatcccct |
334 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||||| ||| |||||| ||||||||| |
|
|
| T |
33096280 |
atcaccctctttattttttcttcccgcacctgacaacacatcgaactgattattcttatcccct |
33096217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 21582401 - 21582457
Alignment:
| Q |
271 |
atcaccctctttattttttcttctcacactagacaacacatcaaacatattattttt |
327 |
Q |
| |
|
|||||||||||||| ||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
21582401 |
atcaccctctttataatttcttcccacccttgacaacacatcaaacatattattttt |
21582457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 43770330 - 43770279
Alignment:
| Q |
283 |
attttttcttctcacactagacaacacatcaaacatattatttttatcccct |
334 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
43770330 |
attttttcttcccacccatgacaacacatcaaacatattatttttgtcccct |
43770279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 16541707 - 16541645
Alignment:
| Q |
272 |
tcaccctctttattttttcttctcacactagacaacacatcaaacatattatttttatcccct |
334 |
Q |
| |
|
|||||||| ||||||||||||| | | | |||||||||||||||||||| ||||| |||||| |
|
|
| T |
16541707 |
tcaccctccttattttttcttcccgctccggacaacacatcaaacatattctttttgtcccct |
16541645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 16623955 - 16624017
Alignment:
| Q |
272 |
tcaccctctttattttttcttctcacactagacaacacatcaaacatattatttttatcccct |
334 |
Q |
| |
|
|||||||| ||||||||||||| | | | |||||||||||||||||||| ||||| |||||| |
|
|
| T |
16623955 |
tcaccctccttattttttcttcccgctccggacaacacatcaaacatattctttttgtcccct |
16624017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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