View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7666_high_11 (Length: 328)
Name: NF7666_high_11
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 28690996 - 28690674
Alignment:
| Q |
1 |
tcacattaagtgaaagtactaataaaaattgtatcaatccttagatgatatatagaattattgttacctgtaatggtgtcaccaagttcacttatatcac |
100 |
Q |
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| T |
28690996 |
tcacattaagtgaaagtactaataaaaattgtatcaatccttagatgatatatagaattattgttacctgtaatggtgtcaccaagttcacttatatcac |
28690897 |
T |
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| Q |
101 |
tggtggtgttggtgtaagaaaatcccactccagcaggggattcaagaaacaaaagatttgcagctgtagaaaagatttagtttatttttaaaattgtaca |
200 |
Q |
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| T |
28690896 |
tggtggtgttggtgtaagaaaatcccactccagcaggggattcaagaaacaaaagatttgcagctgtagaaaagatttagtttatttttaaaattgtaca |
28690797 |
T |
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| Q |
201 |
ggatatacaaagtttatctcaaattaacaaatttacaatgaattgaactaccattattgcaatgcattgtgaaagttatcaat---ttgaaattgaccca |
297 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28690796 |
agatatacaaagtttatctca--------aatttacaatgaattgaactaccatttttgcaatgcattgtgaaagttatcaatttattgaaattgaccca |
28690705 |
T |
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| Q |
298 |
cctttattccaagaatatgggttcaacttga |
328 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28690704 |
cctttattccaagaatatgggttcaacttga |
28690674 |
T |
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