View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7666_high_2 (Length: 585)
Name: NF7666_high_2
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 572
Target Start/End: Complemental strand, 5592896 - 5592346
Alignment:
| Q |
18 |
gcaaaaataacattatgttcgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttgg |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5592896 |
gcaaaaataacattatgtccgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagccaacttgg |
5592797 |
T |
|
| Q |
118 |
aggaattgacaaagctcaagaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatat |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592796 |
aggaattgacaaagctcaagaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatat |
5592697 |
T |
|
| Q |
218 |
ctatcaagcaacgtttatagccctgagcagtatgcagaatctctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcactt |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592696 |
ctatcaagcaacgtttatagccctgagcagtatgcagaaaatctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcactt |
5592597 |
T |
|
| Q |
318 |
ttgcttttactaaatgatttatgaatatcatggtttataacagaagcatttggtatatgtacgtaacaggctttacatgaaattggagcaagaaaatatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5592596 |
ttgcttttactaaatgatttatgaatatcatggtttataacagaagcatttggtatat----gtaacaggctttacatgaaattggagcaagaaaatatg |
5592501 |
T |
|
| Q |
418 |
tgttacctgggttaggcctattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccat |
517 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592500 |
tgttacctgggttaggcctattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccat |
5592401 |
T |
|
| Q |
518 |
ttttgatttcaagcttaaatctctagtggatcatttcaataataagttctctgct |
572 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
5592400 |
ttttgatttcaagcttaaatctttagtggatcatttcaataataagttctctgct |
5592346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 5573159 - 5572884
Alignment:
| Q |
18 |
gcaaaaataacattatgttcgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttgg |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5573159 |
gcaaaaataacattatgtccgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagcagacttgg |
5573060 |
T |
|
| Q |
118 |
aggaattgacaaagctcaagaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatat |
217 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||| || |
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| T |
5573059 |
aggtattgacaaagctcaacaataccttaacaaatgcttgtattatgtgaatattggaagtaacgattacataaacaattactttcttccccaattctac |
5572960 |
T |
|
| Q |
218 |
ctatcaagcaacgtttatagccctgagcagtatgcagaatctctaattgaagagttatctttgaatttacaggtat |
293 |
Q |
| |
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| | |||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
5572959 |
ccaacaagtcacatttatagccctgagcagtatgcagaagctctaattcaagagttatctttgaatttactggtat |
5572884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 59 - 338
Target Start/End: Complemental strand, 5586629 - 5586350
Alignment:
| Q |
59 |
ttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttgt |
158 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||| | || |||||||||||||||||||||| |||||||| | |
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| T |
5586629 |
ttgggattacagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaataccttaataaatgcttat |
5586530 |
T |
|
| Q |
159 |
attatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagcaacgtttatagccctgagcagtatgcagaatc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||| ||||||| |||||| | |
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|
| T |
5586529 |
attatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatccaacaagacacatttatagccctcagcagtacgcagaagc |
5586430 |
T |
|
| Q |
259 |
tctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcacttttgcttttactaaatgattta |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
5586429 |
tctaattgaagagttatctttgaatttacaggtatccccttgaactttgtgtttcacttttactttcactaaatgattta |
5586350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 336 - 572
Target Start/End: Complemental strand, 5586309 - 5586077
Alignment:
| Q |
336 |
ttatgaatatcatggtttataacagaagcatttggtatatgtacgtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgggttaggcc |
435 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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|
| T |
5586309 |
ttatgaatatcatggtttataatagaggcatttggtacat----ggaacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggtc |
5586214 |
T |
|
| Q |
436 |
tattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttcaagcttaa |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5586213 |
tattgggctgcactccaagtgccatctttactcatgggacagatgggtcttgtgttgaggagcaaaatgacatcgcatccatttttgatttcaagcttaa |
5586114 |
T |
|
| Q |
536 |
atctctagtggatcatttcaataataagttctctgct |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
5586113 |
atctctagtggatcatttcaataataagttctctgct |
5586077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 21 - 326
Target Start/End: Complemental strand, 5576187 - 5575882
Alignment:
| Q |
21 |
aaaataacattatgttcgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggagg |
120 |
Q |
| |
|
||||||||||||| | || ||||||| || ||| || ||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||| ||| |
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|
| T |
5576187 |
aaaataacattatttctgtgcagggttttgttatcagtttgggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttgaagg |
5576088 |
T |
|
| Q |
121 |
aattgacaaagctcaagaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatcta |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||| || | | |
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|
| T |
5576087 |
tattgacaaagctcaagaataccttagcaaatgcttgtattatgtgaatattggcagtaatgattacataaacaattactttcgtcctcaattctaccca |
5575988 |
T |
|
| Q |
221 |
tcaagcaacgtttatagccctgagcagtatgcagaatctctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcacttttg |
320 |
Q |
| |
|
|||| | |||||||||||||||| ||||||||| |||||||| ||||||||||||| |||||| |||||||||| |||| ||||||| || |||| |
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|
| T |
5575987 |
acaagtcaaatttatagccctgagcaatatgcagaagctctaattcaagagttatctttaaatttattggtatccactcaaactctgtgtttgacctttg |
5575888 |
T |
|
| Q |
321 |
ctttta |
326 |
Q |
| |
|
||||| |
|
|
| T |
5575887 |
ttttta |
5575882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 380 - 568
Target Start/End: Complemental strand, 5575795 - 5575607
Alignment:
| Q |
380 |
gtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgggttaggcctattgggctgcactccaagtgccatccttactcatgagacatat |
479 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||| ||| | |
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|
| T |
5575795 |
gtaacagactttacatgacattggagctagaaaatatgtgttagtagggttaggccttttgggctgcacaccaagtgccatctttactcatggaacaaac |
5575696 |
T |
|
| Q |
480 |
gggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttcaagcttaaatctctagtggatcatttcaataataagttctc |
568 |
Q |
| |
|
||||| || ||||| ||| |||||| | ||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
5575695 |
gggtcctgcgttgatgaggaaaatgcccctgcattgattttcaatttcaagcttaaatttttagtggatcatttcaataataagttctc |
5575607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 5582317 - 5582176
Alignment:
| Q |
21 |
aaaataacattatgttcgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggagg |
120 |
Q |
| |
|
|||||||||||| || |||||||||| || ||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||||| |
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|
| T |
5582317 |
aaaataacattacgtctgtacagggttctgttatcagcttgggattacagttaaagaatcacaaagtaatagtttctcaaattgctagcagacttggagg |
5582218 |
T |
|
| Q |
121 |
aattgacaaagctcaagaataccttaacaaatgcttgtatta |
162 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||| |
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|
| T |
5582217 |
tattgacagttctgaacaataccttaacaaatgcttgtatta |
5582176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 5572712 - 5572667
Alignment:
| Q |
527 |
caagcttaaatctctagtggatcatttcaataataagttctctgct |
572 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5572712 |
caagcttaaatctctagtggaacatttcaataataagttctctgct |
5572667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 5580531 - 5580486
Alignment:
| Q |
527 |
caagcttaaatctctagtggatcatttcaataataagttctctgct |
572 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5580531 |
caagcttaaatctctagtggaacatttcaataataagttctctgct |
5580486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 12052456 - 12052563
Alignment:
| Q |
58 |
cttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttg |
157 |
Q |
| |
|
||||| ||||||||| | ||||||| || ||||||||||| ||||||||| | ||||||| | |||| ||| |||| |||||||||||||||| ||| |
|
|
| T |
12052456 |
cttggtattacagttgacaaatcaccgacttatagtttctgaaattgctactagacttggaagtcttgaaaaaactcagcaataccttaacaaatgtttg |
12052555 |
T |
|
| Q |
158 |
tattatgt |
165 |
Q |
| |
|
| |||||| |
|
|
| T |
12052556 |
tgttatgt |
12052563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 5580614 - 5580576
Alignment:
| Q |
384 |
caggctttacatgaaattggagcaagaaaatatgtgtta |
422 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
5580614 |
caggctctacatgacattggagcaagaaaatatgtgtta |
5580576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 5613546 - 5613506
Alignment:
| Q |
152 |
tgcttgtattatgtgcatattggcagtaatgattacataaa |
192 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
5613546 |
tgcttgtattatgtgaatattggcagcaacgattacataaa |
5613506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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