View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7666_high_4 (Length: 399)

Name: NF7666_high_4
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7666_high_4
NF7666_high_4
[»] chr8 (2 HSPs)
chr8 (221-382)||(14383873-14384034)
chr8 (20-83)||(14383680-14383743)
[»] chr4 (4 HSPs)
chr4 (259-382)||(20038355-20038478)
chr4 (225-382)||(21422376-21422533)
chr4 (20-113)||(21422171-21422263)
chr4 (41-83)||(20038146-20038188)
[»] chr1 (2 HSPs)
chr1 (259-382)||(18994058-18994181)
chr1 (20-113)||(18994326-18994418)
[»] chr5 (2 HSPs)
chr5 (259-382)||(26063535-26063658)
chr5 (20-113)||(26063298-26063390)
[»] chr2 (1 HSPs)
chr2 (259-351)||(36932219-36932311)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 221 - 382
Target Start/End: Original strand, 14383873 - 14384034
Alignment:
Q  221 aaactttgtgtgaaattgaaactgaagggnnnnnnnnngggaagggaaattgaaactgaagttagtgtcaaattgaaactgtaatgctaagattttttat 320  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  14383873 aaactttgtgtgaaattgaaactgaagggaaaaaaaaagggaagggaaattgaaaataaagttagtgtcaaattgaaactgtgatgctaagattttttat 14383972  T
Q  321 actattagtgttaatttgtttctatcattggtttttgttagtgagaaattgaaaatgtgatg 382  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14383973 actattagtgttaatttgtttttatcattggtttttgttagtgagaaattgaaaatgtgatg 14384034  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 14383680 - 14383743
Alignment:
Q  20 accacaccctccctctctatagtttttagttctgacatcatccgtctccatctctcctcacaaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14383680 accacaccctccctctctatagtttttagttctgacatcatccgtctccatctctcctcacaaa 14383743  T

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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 259 - 382
Target Start/End: Original strand, 20038355 - 20038478
Alignment:
Q  259 gggaagggaaattgaaactgaagttagtgtcaaattgaaactgtaatgctaagattttttatactattagtgttaatttgtttctatcattggtttttgt 358  Q
    |||||||||||| |||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20038355 gggaagggaaatagaaactaaagttagtgtgaaattgaaactgtgatgctaagattttgtatactattagtgttaatttgtttctatcattggtttttgt 20038454  T
Q  359 tagtgagaaattgaaaatgtgatg 382  Q
    |||||||||||||||| |||||||    
T  20038455 tagtgagaaattgaaactgtgatg 20038478  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 225 - 382
Target Start/End: Original strand, 21422376 - 21422533
Alignment:
Q  225 tttgtgtgaaattgaaactgaagggnnnnnnnnngggaagggaaattgaaactgaagttagtgtcaaattgaaactgtaatgctaagattttttatacta 324  Q
    ||||||||||||| |||||||||||         |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |    
T  21422376 tttgtgtgaaatttaaactgaaggggaaaaaaaagggaagggaaatagaaaccgaagttagtgtcaaattgaaactgtgatgctaagattttatatacca 21422475  T
Q  325 ttagtgttaatttgtttctatcattggtttttgttagtgagaaattgaaaatgtgatg 382  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||    
T  21422476 ttagtgttaatttgtttctatcattggtttttgttcgtgaaaaatttaaaatctgatg 21422533  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 21422171 - 21422263
Alignment:
Q  20 accacaccctccctctctatagtttttagttctgacatcatccgtctccatctctcctcacaaagacacaaaccctaactgaataaccgtaagc 113  Q
    |||||||||||||||| ||| ||||||||||| ||| |||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  21422171 accacaccctccctctgtatcgtttttagttcagacttcatcc-tcaccatctctcctcacaaagacacaaaccctgactgaataactgtaagc 21422263  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 20038146 - 20038188
Alignment:
Q  41 gtttttagttctgacatcatccgtctccatctctcctcacaaa 83  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||    
T  20038146 gttttcagttcagacttcatccgtctccatctctcctcacaaa 20038188  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 259 - 382
Target Start/End: Complemental strand, 18994181 - 18994058
Alignment:
Q  259 gggaagggaaattgaaactgaagttagtgtcaaattgaaactgtaatgctaagattttttatactattagtgttaatttgtttctatcattggtttttgt 358  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  18994181 gggaagggaaatagaaaccgaagttagtgtcaaattgaaactgtgatgctaagattttatatactattagtgttaatttgtgtctatcattggtttttgt 18994082  T
Q  359 tagtgagaaattgaaaatgtgatg 382  Q
    |||||| |||||||||||||||||    
T  18994081 tagtgaaaaattgaaaatgtgatg 18994058  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 18994418 - 18994326
Alignment:
Q  20 accacaccctccctctctatagtttttagttctgacatcatccgtctccatctctcctcacaaagacacaaaccctaactgaataaccgtaagc 113  Q
    |||||||||||||||| ||| ||||| ||||| ||| |||||| |||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  18994418 accacaccctccctctgtatcgttttcagttcagacttcatcc-tctccatctctcgtcacaaacacacaaaccctaactgaataactgtaagc 18994326  T

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Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 259 - 382
Target Start/End: Original strand, 26063535 - 26063658
Alignment:
Q  259 gggaagggaaattgaaactgaagttagtgtcaaattgaaactgtaatgctaagattttttatactattagtgttaatttgtttctatcattggtttttgt 358  Q
    |||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  26063535 gggaagggaaatagaaaccgaagttagtgtcaaattgaaactatgatgctaagattttatatactattagtgttaatttgtttatatcattggtttttgt 26063634  T
Q  359 tagtgagaaattgaaaatgtgatg 382  Q
    |||||| |||||||||||||||||    
T  26063635 tagtgaaaaattgaaaatgtgatg 26063658  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 26063298 - 26063390
Alignment:
Q  20 accacaccctccctctctatagtttttagttctgacatcatccgtctccatctctcctcacaaagacacaaaccctaactgaataaccgtaagc 113  Q
    |||||||||||||||| ||| ||||| ||||| ||| |||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||    
T  26063298 accacaccctccctctatatcgttttcagttcagacttcatcc-tcttcatctatcctcacaaagacacaaaccctaactgaataactgtaagc 26063390  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 36932219 - 36932311
Alignment:
Q  259 gggaagggaaattgaaactgaagttagtgtcaaattgaaactgtaatgctaagattttttatactattagtgttaatttgtttctatcattgg 351  Q
    |||||||||||| ||||||||| ||||||| ||||||||| ||| |||||  |||||| | |||| ||||||| ||||||||||| |||||||    
T  36932219 gggaagggaaatggaaactgaaattagtgtgaaattgaaaatgtgatgctcggattttgtgtactcttagtgtaaatttgtttctgtcattgg 36932311  T

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