View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7666_high_5 (Length: 396)
Name: NF7666_high_5
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 58 - 385
Target Start/End: Original strand, 17346179 - 17346506
Alignment:
| Q |
58 |
ataaaaatatcaggactaagagtacaatgtacatattctatcatccgtgttgagaattcagtgtttttagattatgtaattctataggaatggagtgctg |
157 |
Q |
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| T |
17346179 |
ataacaatatcaggactaagagtacaatgcacatattctatcatccgtgttgagaattcagtgttttaagattatgtaattttataggaatggagtgcta |
17346278 |
T |
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| Q |
158 |
cagaggagaaactcgtggcaggacggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttcaagtaaaagatcagattg |
257 |
Q |
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| T |
17346279 |
cagaggagaaactcatggcaggatggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttcaagtaaaagatcagattg |
17346378 |
T |
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| Q |
258 |
gtagctatttttactttccttcccttgcattccacaaggcagcaggaggttatggcggtttcacaatcgctagtcgctctgtgattcctgtaccttttga |
357 |
Q |
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| T |
17346379 |
gtagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctagtcgctccgtgattcccgtacctttcga |
17346478 |
T |
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| Q |
358 |
ccctccatccggagattacaccatattg |
385 |
Q |
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| T |
17346479 |
tcctccatccggagattacaccatattg |
17346506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 382
Target Start/End: Complemental strand, 17137666 - 17137291
Alignment:
| Q |
4 |
cggtataaaagctgacgtgattacataggttagtgagaaccgaaaaataagtaaataaaaatatcaggactaagagtacaatgtacatattctatcatcc |
103 |
Q |
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| T |
17137666 |
cggtataaatgttgacatgattacataaattagcgagaacaaataaacatgtaaataacaatattaggattaggactacaatgtacatattctatcatcc |
17137567 |
T |
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| Q |
104 |
gtgttgagaattcagtgtttttagattatgtaattctataggaatggagtgctgcagaggagaaactcgtggcaggacggagtgtatggtacaaattgtc |
203 |
Q |
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| T |
17137566 |
atgccgagaattcagtgtttttagattatgtaattctataggaatggagtgctgcagaggagaaactcatggcaagatggagtgtatggtacaaattgtc |
17137467 |
T |
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| Q |
204 |
caatctctccaggacagaacttcacttatattcttcaagtaaaagatcagattggtagctatttttactttccttcccttgcattccacaaggcagcagg |
303 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
17137466 |
caatctctccaggaaagaac---acttatattcttcaagtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcagg |
17137370 |
T |
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| Q |
304 |
aggttatggcggtttcacaatcgctagtcgctctgtgattcctgtaccttttgaccctccatccggagattacaccata |
382 |
Q |
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| T |
17137369 |
aggttatggcggtttcacaatcgctactcgctccgtgattcctgtaccttttgatcctccatccggagatttcaccata |
17137291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 55711324 - 55711378
Alignment:
| Q |
219 |
agaacttcacttatattcttcaagtaaaagatcagattggtagctatttttactt |
273 |
Q |
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| T |
55711324 |
agaacttcacttatactcttcaggtgaaagatcagattggtagctatttctactt |
55711378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 312
Target Start/End: Complemental strand, 37092134 - 37091963
Alignment:
| Q |
141 |
ataggaatggagtgctgcagaggagaaactcgtggcaggacggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttca |
240 |
Q |
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||||||||||||||| ||||||||| || || ||||| || ||||| ||||| ||||| |||||||| | ||||| |||||||| |||||| ||||||| |
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| T |
37092134 |
ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca |
37092035 |
T |
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| Q |
241 |
agtaaaagatcagattggtagctatttttactttccttcccttgcattccacaaggcagcaggaggttatgg |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| |
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| T |
37092034 |
agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg |
37091963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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