View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7666_high_6 (Length: 395)
Name: NF7666_high_6
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 5 - 378
Target Start/End: Original strand, 6177317 - 6177690
Alignment:
| Q |
5 |
taatactgattactattggagattttatgatccagagaattaccaacacttgaaggattattgtctatatttttgactatgatgaccaaatgagttcgct |
104 |
Q |
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| T |
6177317 |
taatattgattactattggagattttatgatccagagaattaccaacacttgaaggattattgtctatattttcgactatgatgaccaaatgcgttcgct |
6177416 |
T |
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| Q |
105 |
aggcgttctttggttatagctaattgcatatatatgtaaacctcgggttagttgctgttgaaactgtaaatgtatattgagttttgttgatgtctttaat |
204 |
Q |
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| T |
6177417 |
aggcgttcttttgttatagctaattgcatatatatgtaaacctcgggttagttgctgttgaaactgtaaatgtatattgagttttgttgatgtctttaat |
6177516 |
T |
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| Q |
205 |
gcttaataactaaataggataatttgtggaataaaaaatgaagaaatgtttgtcaattttcaatcaagcaaattggaatattgttgttattatagagaat |
304 |
Q |
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| T |
6177517 |
gcttaataactaaataggataatttgtggaataaaaaatgaagaaatgtttgtcaattttcaatcaagcaaattggaatattgttgttattatagagaat |
6177616 |
T |
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| Q |
305 |
gaatctaattttgatcgattgaatttgctattgaaggtagcttagttactgaacagtatgtgacccttatgatg |
378 |
Q |
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| T |
6177617 |
gaatctaattttgatcgaatgaatttgctattgaaggtagcttagttactgaacagtatgtgacccttatgatg |
6177690 |
T |
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