View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7666_high_7 (Length: 390)
Name: NF7666_high_7
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_high_7 |
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| [»] scaffold0940 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 10001015 - 10001373
Alignment:
| Q |
14 |
cacacacgaccatcctgatcatcctatgccaaaaagaaaataaagtacgggatttcaaatgttgtgaagatgaaaatagcaattgattattgcgcaagta |
113 |
Q |
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| T |
10001015 |
cacacacgaccatcctgatcatcctatgccaaaaaggaaataaagtacgggatttcaaatgttgtgaagatgaaaatagcaattgattattgcgcaagta |
10001114 |
T |
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| Q |
114 |
ctaagcatttggatttacgactttgataaaataattttattaacagtgatgatgatgaatcatgtgacatagatagagaacggttttatgcaaaaaataa |
213 |
Q |
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| T |
10001115 |
ctaagcatttggatttacgactttgataaaataattttattaacagtgatgatgatgaatcctgtgacatagatagagaacggttttatgcaaaaaataa |
10001214 |
T |
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| Q |
214 |
tttcccttctcagaagtacagaattaagccgtcgtacatagtagtatcatttgggccgatcgtacaagcatataaatgttgcaaaaacatattcaagtac |
313 |
Q |
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| T |
10001215 |
tttcccttctcagaagtacagaattaagccgacgtacatagtagtatcatttgggccgatcgtacaagcatataaatgttgcaaaaacatattcaagtac |
10001314 |
T |
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| Q |
314 |
atactgtttcttcataagtttcaattgatttgtggtaaactaattctgtaatatgacat |
372 |
Q |
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| T |
10001315 |
atactgtttcttcataagtttcaattgatttgtggtaaactaattctgtaatatgacat |
10001373 |
T |
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Target: scaffold0940 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0940
Description:
Target: scaffold0940; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 999 - 1066
Alignment:
| Q |
109 |
aagtactaagcatttggatttacgactttgataaaataattttattaacagtgatgatgatgaatcatg |
177 |
Q |
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| T |
999 |
aagttctaagcatttttattgaagactttgataaaataattttaataaca-agatgatgatgaatcatg |
1066 |
T |
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